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1GNC
Asym. Unit
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Asym.Unit (449 KB)
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Models
(10 )
Title
:
STRUCTURE AND DYNAMICS OF THE HUMAN GRANULOCYTE COLONY-STIMULATING FACTOR DETERMINED BY NMR SPECTROSCOPY. LOOP MOBILITY IN A FOUR-HELIX-BUNDLE PROTEIN
Authors
:
T. W. Zink, A. Ross, R. Rudolph, T. A. Holak
Date
:
08 Mar 94 (Deposition) - 31 Jul 94 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Growth Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Zink, A. Ross, K. Luers, C. Cieslar, R. Rudolph, T. A. Holak
Structure And Dynamics Of The Human Granulocyte Colony-Stimulating Factor Determined By Nmr Spectroscopy. Loop Mobility In A Four-Helix-Bundle Protein.
Biochemistry V. 33 8453 1994
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_013073 (L125M, chain A, )
2: VAR_013074 (A142T, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013073
L
157
M
CSF3_HUMAN
Polymorphism
2227329
A
L
125
M
2
UniProt
VAR_013074
A
174
T
CSF3_HUMAN
Polymorphism
2227330
A
A
142
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: INTERLEUKIN_6 (A:65-90)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTERLEUKIN_6
PS00254
Interleukin-6 / G-CSF / MGF signature.
CSF3_HUMAN
97-122
1
A:65-90
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Exons
(4, 4)
Info
All Exons
Exon 1.1f (A:1-36)
Exon 1.2a (A:37-72)
Exon 1.2c (A:73-121)
Exon 1.3c (A:122-175)
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1: Boundary 1.1b/1.1f
2: Boundary 1.1f/1.2a
3: Boundary 1.2a/1.2c
4: Boundary 1.2c/1.3c
5: Boundary 1.3c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000225474
1b
ENSE00001309996
chr17:
38171697-38171767
71
CSF3_HUMAN
1-14
14
0
-
-
1.1f
ENST00000225474
1f
ENSE00000950689
chr17:
38171944-38172107
164
CSF3_HUMAN
14-68
55
1
A:1-36
36
1.2a
ENST00000225474
2a
ENSE00000950690
chr17:
38172486-38172593
108
CSF3_HUMAN
69-104
36
1
A:37-72
36
1.2c
ENST00000225474
2c
ENSE00000950691
chr17:
38172738-38172884
147
CSF3_HUMAN
105-153
49
1
A:73-121
49
1.3c
ENST00000225474
3c
ENSE00001268721
chr17:
38173048-38174066
1019
CSF3_HUMAN
154-207
54
1
A:122-175
54
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1gnca_ (A:)
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Folds
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)
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)
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(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Long-chain cytokines
(46)
Protein domain
:
Granulocyte-colony stimulating factor (G-CSF)
(7)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1gnca_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1gncA00 (A:1-175)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
1gncA00
A:1-175
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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