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1GM5
Asym. Unit
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Asym.Unit (150 KB)
Biol.Unit 1 (140 KB)
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(1)
Title
:
STRUCTURE OF RECG BOUND TO THREE-WAY DNA JUNCTION
Authors
:
M. R. Singleton, S. Scaife, D. B. Wigley
Date
:
11 Sep 01 (Deposition) - 03 Oct 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.24
Chains
:
Asym. Unit : A,X,Y,Z
Biol. Unit 1: A,X,Y,Z (1x)
Keywords
:
Helicase, Replication Restart
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. R. Singleton, S. Scaife, D. B. Wigley
Structural Analysis Of Dna Replication Fork Reversal By Recg
Cell(Cambridge, Mass. ) V. 107 79 2001
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: MAGNESIUM ION (MGa)
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:403 , MET A:522 , ADP A:1756
BINDING SITE FOR RESIDUE MG A1757
2
AC2
SOFTWARE
PHE A:367 , LEU A:369 , GLN A:373 , GLY A:399 , SER A:400 , GLY A:401 , LYS A:402 , THR A:403 , VAL A:404 , ARG A:436 , MG A:1757
BINDING SITE FOR RESIDUE ADP A1756
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d1gm5a1 (A:7-105)
2a: SCOP_d1gm5a2 (A:106-285)
3a: SCOP_d1gm5a3 (A:286-549)
3b: SCOP_d1gm5a4 (A:550-755)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
RecG, N-terminal domain
(1)
Family
:
RecG, N-terminal domain
(1)
Protein domain
:
RecG, N-terminal domain
(1)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1gm5a1
A:7-105
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
RecG wedge domain
(1)
Protein domain
:
RecG wedge domain
(1)
Thermotoga maritima [TaxId: 2336]
(1)
2a
d1gm5a2
A:106-285
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Tandem AAA-ATPase domain
(59)
Protein domain
:
RecG helicase domain
(1)
Thermotoga maritima [TaxId: 2336]
(1)
3a
d1gm5a3
A:286-549
3b
d1gm5a4
A:550-755
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_1gm5A04 (A:349-552)
1b: CATH_1gm5A05 (A:553-725)
2a: CATH_1gm5A01 (A:7-101)
3a: CATH_1gm5A03 (A:153-254)
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)
Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermotoga maritima. Organism_taxid: 2336.
(3)
1a
1gm5A04
A:349-552
1b
1gm5A05
A:553-725
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
RecG, N-terminal domain
(1)
Thermotoga maritima. Organism_taxid: 2336.
(1)
2a
1gm5A01
A:7-101
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Thermotoga maritima. Organism_taxid: 2336.
(3)
3a
1gm5A03
A:153-254
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Pfam Domains
(0, 0)
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