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1GL4
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (62 KB)
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(1)
Title
:
NIDOGEN-1 G2/PERLECAN IG3 COMPLEX
Authors
:
M. Kvansakul, M. Hopf, A. Ries, R. Timpl, E. Hohenester
Date
:
23 Aug 01 (Deposition) - 28 Nov 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Basement Membrane, Immunoglobulin-Like Domain, Extracellular Matrix, Proteoglycan, Heparan Sulfate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Kvansakul, M. Hopf, A. Ries, R. Timpl, E. Hohenester
Structural Basis For The High-Affinity Interaction Of Nidogen-1 With Immunoglobulin-Like Domain 3 Of Perlecan
Embo J. V. 20 5342 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
2a: ZINC ION (ZNa)
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Label:
No.
Name
Count
Type
Full Name
1
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:511 , HIS A:513 , HIS A:515 , HIS B:1809
BINDING SITE FOR RESIDUE ZN A1632
2
AC2
SOFTWARE
LEU B:1808 , HIS B:1809 , GLN B:1849 , THR B:1851 , HOH B:2023
BINDING SITE FOR RESIDUE EPE B2858
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ASX_HYDROXYL (A:373-384|-|-)
2: NIDOGEN_G2 (A:400-631)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
NID1_MOUSE
401-412
725-736
815-826
1
A:373-384
-
-
2
NIDOGEN_G2
PS50993
Nidogen G2 beta-barrel domain profile.
NID1_MOUSE
428-665
1
A:400-631
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1gl4b_ (B:)
2a: SCOP_d1gl4a1 (A:399-631)
3a: SCOP_d1gl4a2 (A:359-398)
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)
Protein Domains
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(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Perlecan Ig3 domain
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
1a
d1gl4b_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
GFP-like
(339)
Superfamily
:
GFP-like
(339)
Family
:
Domain G2 of nidogen-1
(2)
Protein domain
:
Domain G2 of nidogen-1
(2)
Mouse (Mus musculus) [TaxId: 10090]
(2)
2a
d1gl4a1
A:399-631
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-like domain of nidogen-1
(2)
Protein domain
:
EGF-like domain of nidogen-1
(2)
Mouse (Mus musculus) [TaxId: 10090]
(2)
3a
d1gl4a2
A:359-398
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1gl4B00 (B:1769-1857)
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Organisms
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)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse (Mus musculus)
(152)
1a
1gl4B00
B:1769-1857
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (66 KB)
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