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1GL3
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (120 KB)
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(1)
Title
:
ASPARTATE BETA-SEMIALDEHYDE DEHYDROGENASE IN COMPLEX WITH NADP AND SUBSTRATE ANALOGUE S-METHYL CYSTEINE SULFOXIDE
Authors
:
A. T. Hadfield, G. Kryger, J. Ouyang, D. Ringe, G. A. Petsko, R. E. Viola
Date
:
23 Aug 01 (Deposition) - 01 Nov 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase, Crystal Structure, Dehydrogenase, Escherichia Coli, Enzyme, Nadp, Diaminopimelate Biosynthesi Lysine Biosynthesis
(Keyword Search:
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Reference
:
A. T. Hadfield, C. Shammas, G. Kryger, D. Ringe, G. A. Petsko, J. Ouyang, R. E. Viola
Active Site Analysis Of The Potential Antimicrobial Target Aspartate Semialdehyde Dehydrogenase.
Biochemistry V. 40 14475 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CYSTEINE (CYSa)
2a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
2b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CYS
1
Mod. Amino Acid
CYSTEINE
2
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:135 , THR A:136 , GLN A:162 , ILE A:230 , GLU A:241 , ARG A:267 , HIS A:274 , GLN A:350 , NDP A:601
BINDING SITE FOR RESIDUE CYS A 501
2
AC2
SOFTWARE
GLY A:8 , ARG A:10 , GLY A:11 , MET A:12 , VAL A:13 , THR A:37 , SER A:38 , CYS A:72 , GLN A:73 , GLY A:74 , GLY A:75 , ALA A:98 , SER A:165 , GLY A:166 , GLY A:168 , ALA A:169 , ARG A:173 , ASP A:188 , GLN A:350 , GLY A:354 , CYS A:501 , HOH A:2086 , HOH A:2087 , PRO B:193
BINDING SITE FOR RESIDUE NDP A 601
3
AC3
SOFTWARE
PRO A:193 , GLY B:8 , ARG B:10 , GLY B:11 , MET B:12 , VAL B:13 , SER B:36 , THR B:37 , SER B:38 , CYS B:72 , GLN B:73 , GLY B:75 , ALA B:97 , ALA B:98 , CYS B:135 , SER B:165 , GLY B:166 , GLY B:168 , ALA B:169 , ARG B:170 , ARG B:173 , GLN B:350 , LEU B:351 , GLY B:354 , HOH B:2084
BINDING SITE FOR RESIDUE NDP B 601
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ASD (A:261-275,B:261-275,A:261-275,B:26...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ASD
PS01103
Aspartate-semialdehyde dehydrogenase signature.
DHAS_ECO57
261-275
2
A:261-275
B:261-275
DHAS_ECOLI
261-275
2
A:261-275
B:261-275
DHAS_SHIFL
261-275
2
A:261-275
B:261-275
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1gl3a2 (A:134-354)
1b: SCOP_d1gl3b2 (B:134-354)
2a: SCOP_d1gl3a1 (A:1-133,A:355-367)
2b: SCOP_d1gl3b1 (B:1-133,B:355-367)
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)
Protein Domains
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)
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FwdE/GAPDH domain-like
(188)
Superfamily
:
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
(179)
Family
:
GAPDH-like
(99)
Protein domain
:
Aspartate beta-semialdehyde dehydrogenase
(31)
Escherichia coli [TaxId: 562]
(4)
1a
d1gl3a2
A:134-354
1b
d1gl3b2
B:134-354
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
(179)
Protein domain
:
Aspartate beta-semialdehyde dehydrogenase
(31)
Escherichia coli [TaxId: 562]
(4)
2a
d1gl3a1
A:1-133,A:355-367
2b
d1gl3b1
B:1-133,B:355-367
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1gl3A02 (A:135-350)
1b: CATH_1gl3B02 (B:135-350)
2a: CATH_1gl3A01 (A:1-134,A:351-367)
2b: CATH_1gl3B01 (B:1-134,B:351-367)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Escherichia coli. Organism_taxid: 562. Cell_line: jm109.
(1)
1a
1gl3A02
A:135-350
1b
1gl3B02
B:135-350
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli. Organism_taxid: 562. Cell_line: jm109.
(1)
2a
1gl3A01
A:1-134,A:351-367
2b
1gl3B01
B:1-134,B:351-367
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Pfam Domains
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Asymmetric Unit 1
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