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1GL2
Asym. Unit
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Asym.Unit (45 KB)
Biol.Unit 1 (42 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AN ENDOSOMAL SNARE CORE COMPLEX
Authors
:
W. Antonin, S. Becker, R. Jahn, T. R. Schneider
Date
:
22 Aug 01 (Deposition) - 15 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Membrane Protein, Membrane Fusion Protein Complex, Coiled Coil, Transmembrane, Transport
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
W. Antonin, D. Fasshauer, S. Becker, R. Jahn, T. R. Schneider
Crystal Structure Of The Endosomal Snare Complex Reveals Common Structural Principles Of All Snares.
Nat. Struct. Biol. V. 9 107 2001
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: V_SNARE (A:11-64)
2: SYNAPTOBREVIN (A:29-48)
3: SYNTAXIN (B:171-210)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
V_SNARE
PS50892
v-SNARE coiled-coil homology domain profile.
VAMP8_RAT
11-71
1
A:11-64
2
SYNAPTOBREVIN
PS00417
Synaptobrevin signature.
VAMP8_RAT
29-48
1
A:29-48
3
SYNTAXIN
PS00914
Syntaxin / epimorphin family signature.
STX7_MOUSE
171-210
1
B:171-210
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Exons
(2, 2)
Info
All Exons
Exon 1.6 (D:152-181)
Exon 1.7 (D:181-206)
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000005204
1
ENSRNOE00000341903
chr10:
54700555-54700595
41
STX8_RAT
1-6
6
0
-
-
1.2
ENSRNOT00000005204
2
ENSRNOE00000238155
chr10:
54703766-54703865
100
STX8_RAT
6-39
34
0
-
-
1.3
ENSRNOT00000005204
3
ENSRNOE00000238197
chr10:
54705681-54705775
95
STX8_RAT
40-71
32
0
-
-
1.4
ENSRNOT00000005204
4
ENSRNOE00000036361
chr10:
54716812-54716922
111
STX8_RAT
71-108
38
0
-
-
1.5
ENSRNOT00000005204
5
ENSRNOE00000036439
chr10:
54740445-54740569
125
STX8_RAT
108-150
43
0
-
-
1.6
ENSRNOT00000005204
6
ENSRNOE00000036508
chr10:
54751651-54751743
93
STX8_RAT
150-181
32
1
D:152-181
30
1.7
ENSRNOT00000005204
7
ENSRNOE00000036573
chr10:
54846609-54846710
102
STX8_RAT
181-215
35
1
D:181-206
26
1.8
ENSRNOT00000005204
8
ENSRNOE00000238074
chr10:
54941869-54942042
174
STX8_RAT
215-236
22
0
-
-
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SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1gl2a_ (A:)
2a: SCOP_d1gl2b_ (B:)
3a: SCOP_d1gl2d_ (D:)
4a: SCOP_d1gl2c_ (C:)
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Protein Domains
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Organisms
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Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
SNARE fusion complex
(33)
Family
:
SNARE fusion complex
(31)
Protein domain
:
Endobrevin
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1gl2a_
A:
Protein domain
:
Syntaxin 7
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
2a
d1gl2b_
B:
Protein domain
:
Syntaxin 8
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
3a
d1gl2d_
D:
Protein domain
:
Vesicle transport v-SNARE protein VTI1b
(1)
Mouse (Mus musculus) [TaxId: 10090]
(1)
4a
d1gl2c_
C:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1gl2B00 (B:169-228)
1b: CATH_1gl2C00 (C:139-198)
1c: CATH_1gl2D00 (D:152-206)
1d: CATH_1gl2A00 (A:11-64)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.110, no name defined]
(17)
Rat (Rattus norvegicus)
(3)
1a
1gl2B00
B:169-228
1b
1gl2C00
C:139-198
1c
1gl2D00
D:152-206
1d
1gl2A00
A:11-64
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Pfam Domains
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Asymmetric Unit 1
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