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Getting 'Exon' information from database.
1GKC
Asym. Unit
Info
Asym.Unit (63 KB)
Biol.Unit 1 (30 KB)
Biol.Unit 2 (30 KB)
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(1)
Title
:
MMP9-INHIBITOR COMPLEX
Authors
:
S. Rowsell, R. A. Pauptit
Date
:
10 Aug 01 (Deposition) - 16 May 02 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Matrix Metalloprotease, Hydrolase, Glycoprotein, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Rowsell, P. Hawtin, C. A. Minshull, H. Jepson, S. Brockbank, D. Barratt, A. M. Slater, W. Mcpheat, D. Waterson, A. Henney, R. A. Pauptit
Crystal Structure Of Mmp9 In Complex With A Reverse Hydroxamate Inhibitor
J. Mol. Biol. V. 319 173 2002
[
close entry info
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
2a: N~2~-[(2R)-2-{[FORMYL(HYDROXY)AMIN... (NFHa)
2b: N~2~-[(2R)-2-{[FORMYL(HYDROXY)AMIN... (NFHb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
10
Ligand/Ion
CALCIUM ION
2
NFH
2
Ligand/Ion
N~2~-[(2R)-2-{[FORMYL(HYDROXY)AMINO]METHYL}-4-METHYLPENTANOYL]-N,3-DIMETHYL-L-VALINAMIDE
3
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:182 , GLY A:183 , ASP A:185 , LEU A:187 , ASP A:205 , GLU A:208
BINDING SITE FOR RESIDUE CA A 1444
02
AC2
SOFTWARE
ASP A:165 , GLY A:197 , GLN A:199 , ASP A:201 , HOH A:2028 , HOH A:2039
BINDING SITE FOR RESIDUE CA A 1445
03
AC3
SOFTWARE
ASP A:131 , ASP A:206 , GLU A:208
BINDING SITE FOR RESIDUE CA A 1446
04
AC4
SOFTWARE
SER A:211 , LEU A:212 , GLY A:213 , LYS A:214 , GLY A:215 , HOH A:2047 , HOH A:2050
BINDING SITE FOR RESIDUE CA A 1447
05
AC5
SOFTWARE
GLY A:186 , LEU A:187 , LEU A:188 , ALA A:189 , TYR A:393 , HIS A:401 , GLU A:402 , HIS A:405 , HIS A:411 , PRO A:421 , MET A:422 , TYR A:423 , ZN A:1450 , HOH A:2038 , HOH A:2056
BINDING SITE FOR RESIDUE NFH A 1448
06
AC6
SOFTWARE
HIS A:401 , HIS A:405 , HIS A:411 , NFH A:1448
BINDING SITE FOR RESIDUE ZN A 1450
07
AC7
SOFTWARE
HIS A:175 , ASP A:177 , HIS A:190 , HIS A:203
BINDING SITE FOR RESIDUE ZN A 1451
08
AC8
SOFTWARE
SER A:149 , HOH A:2021 , HOH A:2022
BINDING SITE FOR RESIDUE CA A 1452
09
AC9
SOFTWARE
ASP B:182 , GLY B:183 , ASP B:185 , LEU B:187 , ASP B:205 , GLU B:208
BINDING SITE FOR RESIDUE CA B 1444
10
BC1
SOFTWARE
ASP B:165 , GLY B:197 , GLN B:199 , ASP B:201 , HOH B:2030 , HOH B:2041
BINDING SITE FOR RESIDUE CA B 1445
11
BC2
SOFTWARE
ASP B:131 , ASP B:206 , GLU B:208 , HOH B:2011
BINDING SITE FOR RESIDUE CA B 1446
12
BC3
SOFTWARE
SER B:211 , LEU B:212 , GLY B:213 , LYS B:214 , GLN B:391 , HOH B:2052
BINDING SITE FOR RESIDUE CA B 1447
13
BC4
SOFTWARE
SER B:149 , THR B:152 , HOH B:2021 , HOH B:2022
BINDING SITE FOR RESIDUE CA B 1448
14
BC5
SOFTWARE
GLY B:186 , LEU B:187 , LEU B:188 , ALA B:189 , TYR B:393 , HIS B:401 , GLU B:402 , HIS B:405 , HIS B:411 , TYR B:420 , PRO B:421 , MET B:422 , TYR B:423 , ZN B:1451
BINDING SITE FOR RESIDUE NFH B 1449
15
BC6
SOFTWARE
HIS B:401 , HIS B:405 , HIS B:411 , NFH B:1449
BINDING SITE FOR RESIDUE ZN B 1451
16
BC7
SOFTWARE
HIS B:175 , ASP B:177 , HIS B:190 , HIS B:203
BINDING SITE FOR RESIDUE ZN B 1452
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020054 (N127K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020054
N
127
K
MMP9_HUMAN
Polymorphism
3918252
A/B
N
127
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:398-407,B:398-407)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP9_HUMAN
398-407
2
A:398-407
B:398-407
[
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Exons
(5, 10)
Info
All Exons
Exon 1.2 (A:110-124 | B:113-124)
Exon 1.3 (A:124-174 | B:124-174)
Exon 1.4 (A:174-215 | B:174-215)
Exon 1.7 (A:391-392 | B:391-392)
Exon 1.8 (A:392-443 | B:392-443)
View:
Select:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000372330
1
ENSE00001457585
chr20:
44637547-44637703
157
MMP9_HUMAN
1-46
46
0
-
-
1.2
ENST00000372330
2
ENSE00000662462
chr20:
44638505-44638737
233
MMP9_HUMAN
47-124
78
2
A:110-124
B:113-124
15
12
1.3
ENST00000372330
3
ENSE00000845116
chr20:
44639122-44639270
149
MMP9_HUMAN
124-174
51
2
A:124-174
B:124-174
51
51
1.4
ENST00000372330
4
ENSE00000845117
chr20:
44639561-44639689
129
MMP9_HUMAN
174-217
44
2
A:174-215
B:174-215
42
42
1.5
ENST00000372330
5
ENSE00000845118
chr20:
44639782-44639955
174
MMP9_HUMAN
217-275
59
0
-
-
1.6
ENST00000372330
6
ENSE00000845119
chr20:
44640213-44640386
174
MMP9_HUMAN
275-333
59
0
-
-
1.7
ENST00000372330
7
ENSE00000845120
chr20:
44640776-44640952
177
MMP9_HUMAN
333-392
60
2
A:391-392
B:391-392
2
2
1.8
ENST00000372330
8
ENSE00000845121
chr20:
44641066-44641221
156
MMP9_HUMAN
392-444
53
2
A:392-443
B:392-443
52
52
1.9
ENST00000372330
9
ENSE00000845122
chr20:
44641894-44642173
280
MMP9_HUMAN
444-537
94
0
-
-
1.10
ENST00000372330
10
ENSE00000845123
chr20:
44642296-44642435
140
MMP9_HUMAN
537-584
48
0
-
-
1.11
ENST00000372330
11
ENSE00000845124
chr20:
44642763-44642913
151
MMP9_HUMAN
584-634
51
0
-
-
1.12
ENST00000372330
12
ENSE00000845125
chr20:
44643010-44643113
104
MMP9_HUMAN
634-669
36
0
-
-
1.13
ENST00000372330
13
ENSE00001457551
chr20:
44644889-44645200
312
MMP9_HUMAN
669-707
39
0
-
-
[
close EXON info
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gkca_ (A:)
1b: SCOP_d1gkcb_ (B:)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Gelatinase B (MMP-9)
(13)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d1gkca_
A:
1b
d1gkcb_
B:
[
close SCOP info
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1gkcA00 (A:110-443)
1b: CATH_1gkcB00 (B:113-443)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1gkcA00
A:110-443
1b
1gkcB00
B:113-443
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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