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1GK2
Asym. Unit
Info
Asym.Unit (331 KB)
Biol.Unit 1 (326 KB)
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(1)
Title
:
HISTIDINE AMMONIA-LYASE (HAL) MUTANT F329G FROM PSEUDOMONAS PUTIDA
Authors
:
M. Baedeker, G. E. Schulz
Date
:
07 Aug 01 (Deposition) - 21 Feb 02 (Release) - 07 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Lyase, Histidine Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Baedeker, G. E. Schulz
Autocatalytic Peptide Cyclization During Chain Folding Of Histidine Ammonia-Lyase.
Structure V. 10 61 2002
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
2
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:53 , SER A:143 , ASN A:313 , SER A:325 , TYR D:280 , ARG D:283
BINDING SITE FOR RESIDUE SO4 A1511
2
AC2
SOFTWARE
TYR B:53 , ASN B:313 , SER B:325 , TYR C:280 , ARG C:283
BINDING SITE FOR RESIDUE SO4 C1511
3
AC3
SOFTWARE
TYR B:280 , ARG B:283 , SER C:143 , ASN C:195 , ASN C:313 , HOH C:2103
BINDING SITE FOR RESIDUE SO4 C1512
4
AC4
SOFTWARE
TYR A:280 , ARG A:283 , TYR D:53 , ASN D:195 , ASN D:313
BINDING SITE FOR RESIDUE SO4 D1511
5
AC5
SOFTWARE
GLY A:54 , ILE A:55 , THR A:57 , GLN A:76 , LEU A:79 , LYS A:188 , GLU A:189 , GLY A:190 , LEU A:191
BINDING SITE FOR RESIDUE GOL A1510
6
AC6
SOFTWARE
GLY B:54 , ILE B:55 , THR B:57 , PHE B:59 , LEU B:72 , GLN B:76 , LEU B:79 , LYS B:188 , GLY B:190 , LEU B:191 , HOH B:2298
BINDING SITE FOR RESIDUE GOL B1510
7
AC7
SOFTWARE
ILE C:55 , PHE C:59 , GLN C:76 , LEU C:79 , ALA C:187 , LYS C:188 , GLY C:190 , LEU C:191 , HOH C:2050
BINDING SITE FOR RESIDUE GOL C1510
8
AC8
SOFTWARE
GLY D:54 , ILE D:55 , LEU D:72 , GLN D:76 , ALA D:187 , LYS D:188 , GLU D:189 , GLY D:190 , LEU D:191 , HOH D:2290
BINDING SITE FOR RESIDUE GOL D1510
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PAL_HISTIDASE (A:138-154,B:138-154,C:138-154,D:13...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAL_HISTIDASE
PS00488
Phenylalanine and histidine ammonia-lyases signature.
HUTH_PSEPU
139-155
4
A:138-154
B:138-154
C:138-154
D:138-154
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1gk2a_ (A:)
1b: SCOP_d1gk2b_ (B:)
1c: SCOP_d1gk2c_ (C:)
1d: SCOP_d1gk2d_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
L-aspartase-like
(67)
Superfamily
:
L-aspartase-like
(67)
Family
:
HAL/PAL-like
(10)
Protein domain
:
Histidine ammonia-lyase (HAL)
(6)
Pseudomonas putida [TaxId: 303]
(6)
1a
d1gk2a_
A:
1b
d1gk2b_
B:
1c
d1gk2c_
C:
1d
d1gk2d_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1gk2A01 (A:1-196)
1b: CATH_1gk2B01 (B:1-196)
1c: CATH_1gk2C01 (C:1-196)
1d: CATH_1gk2D01 (D:1-196)
2a: CATH_1gk2A02 (A:197-508)
2b: CATH_1gk2B02 (B:197-508)
2c: CATH_1gk2C02 (C:197-508)
2d: CATH_1gk2D02 (D:197-508)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Fumarase C; Chain B, domain 1
(57)
Homologous Superfamily
:
Fumarase/aspartase (N-terminal domain)
(57)
Pseudomonas putida. Organism_taxid: 303.
(2)
1a
1gk2A01
A:1-196
1b
1gk2B01
B:1-196
1c
1gk2C01
C:1-196
1d
1gk2D01
D:1-196
Architecture
:
Up-down Bundle
(3216)
Topology
:
Fumarase C; Chain A, domain 2
(60)
Homologous Superfamily
:
Fumarase/aspartase (Central domain)
(59)
Pseudomonas putida. Organism_taxid: 303.
(2)
2a
1gk2A02
A:197-508
2b
1gk2B02
B:197-508
2c
1gk2C02
C:197-508
2d
1gk2D02
D:197-508
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (331 KB)
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