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1GK0
Biol. Unit 1
Info
Asym.Unit (236 KB)
Biol.Unit 1 (229 KB)
Biol.Unit 2 (230 KB)
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(1)
Title
:
STRUCTURE-BASED PREDICTION OF MODIFICATIONS IN GLUTARYLAMIDASE TO ALLOW SINGLE-STEP ENZYMATIC PRODUCTION OF 7-AMINOCEPHALOSPORANIC ACID FROM CEPHALOSPORIN C
Authors
:
K. Fritz-Wolf, K. P. Koller, G. Lange, A. Liesum, K. Sauber, H. Schreuder, W. Aretz, W. Kabsch
Date
:
07 Aug 01 (Deposition) - 01 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (2x)
Biol. Unit 2: C,D (2x)
Keywords
:
Hydrolase, Cephalosporin Acylase, Glutaryl Acylase, Cephalosporin C, Catalytic Triad, Ntn-Hydrolase, X-Raz Structure
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
K. Fritz-Wolf, K. Koller, G. Lange, A. Liesum, K. Sauber, H. Schreuder, W. Aretz, W. Kabsch
Structure-Based Prediction Of Modifications In Glutarylamidase To Allow Single-Step Enzymatic Production Of 7-Aminocephalosporanic Acid From Cephalosporin C.
Protein Sci. V. 11 92 2002
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Hetero Components
(3, 28)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
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Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
3
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:1 , HIS B:23 , LEU B:24 , VAL B:70 , ASN B:244 , EDO B:1524 , HOH B:2261 , HOH B:2262
BINDING SITE FOR RESIDUE PO4 B1523
2
AC2
SOFTWARE
TYR A:150 , SER B:1 , TYR B:33 , ARG B:57 , PHE B:177 , PO4 B:1523
BINDING SITE FOR RESIDUE EDO B1524
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1gk0_1 (A:,B:)
1b: SCOP_d1gk0_2 (C:,D:)
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Protein Domains
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(
)
Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ntn hydrolase-like
(356)
Superfamily
:
N-terminal nucleophile aminohydrolases (Ntn hydrolases)
(352)
Family
:
Penicillin acylase, catalytic domain
(37)
Protein domain
:
Cephalosporin acylase
(9)
Pseudomonas sp., glutarylamidase [TaxId: 306]
(5)
1a
d1gk0.1
A:,B:
1b
d1gk0.2
C:,D:
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1gk0B01 (B:1-75,B:142-267,B:451-508)
1b: CATH_1gk0D01 (D:1-75,D:142-267,D:451-508)
2a: CATH_1gk0B02 (B:270-450)
2b: CATH_1gk0D02 (D:270-450)
3a: CATH_1gk0A00 (A:8-160)
3b: CATH_1gk0C00 (C:8-160)
4a: CATH_1gk0B03 (B:76-141)
4b: CATH_1gk0D03 (D:76-141)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(128)
Homologous Superfamily
:
Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
(124)
Pseudomonas sp.. Organism_taxid: 306.
(2)
1a
1gk0B01
B:1-75,B:142-267,B:451-508
1b
1gk0D01
D:1-75,D:142-267,D:451-508
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Penicillin amidase (Acylase) alpha subunit, N-terminal domain
(46)
Homologous Superfamily
:
[code=1.10.1400.10, no name defined]
(46)
Pseudomonas sp.. Organism_taxid: 306.
(2)
2a
1gk0B02
B:270-450
2b
1gk0D02
D:270-450
Topology
:
Penicillin Amidohydrolase; domain 1
(47)
Homologous Superfamily
:
Penicillin Amidohydrolase, domain 1
(47)
Pseudomonas sp.. Organism_taxid: 306.
(2)
3a
1gk0A00
A:8-160
3b
1gk0C00
C:8-160
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Penicillin G acylase, beta-roll domain
(38)
Homologous Superfamily
:
[code=2.30.120.10, no name defined]
(38)
Pseudomonas sp.. Organism_taxid: 306.
(2)
4a
1gk0B03
B:76-141
4b
1gk0D03
D:76-141
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Pfam Domains
(0, 0)
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Show PDB file:
Asym.Unit (236 KB)
Header - Asym.Unit
Biol.Unit 1 (229 KB)
Header - Biol.Unit 1
Biol.Unit 2 (230 KB)
Header - Biol.Unit 2
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