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1GJP
Asym. Unit
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Asym.Unit (70 KB)
Biol.Unit 1 (507 KB)
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(1)
Title
:
SCHIFF-BASE COMPLEX OF YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE WITH 4-OXOSEBACIC ACID
Authors
:
P. T. Erskine, L. Coates, R. Newbold, A. A. Brindley, S. P. Wood, M. J. Warren, J. B. Cooper, P. M. Shoolingin-Jordan, R. Neier
Date
:
01 Aug 01 (Deposition) - 02 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (8x)
Keywords
:
Lyase, Dehydratase, Aldolase, Tim Barrel, Tetrapyrrole Synthesis
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
P. T. Erskine, L. Coates, R. Newbold, A. A. Brindley, F. Stauffer, S. P. Wood, M. J. Warren, J. B. Cooper, P. M. Shoolingin-Jordan, R. Neier
The X-Ray Structure Of Yeast 5-Aminolaevulinic Acid Dehydratase Complexed With Two Diacid Inhibitors
Febs Lett. V. 503 196 2001
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 4-OXODECANEDIOIC ACID (4OXa)
2a: ZINC ION (ZNa)
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No.
Name
Count
Type
Full Name
1
4OX
1
Ligand/Ion
4-OXODECANEDIOIC ACID
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:133 , CYS A:135 , CYS A:143 , ARG A:232 , HOH A:2465
BINDING SITE FOR RESIDUE ZN A 400
2
AC2
SOFTWARE
SER A:179 , TYR A:207 , LYS A:210 , TYR A:216 , PHE A:219 , GLN A:236 , LYS A:263 , TYR A:287 , SER A:290 , TYR A:329 , HOH A:2326 , HOH A:2391
BINDING SITE FOR RESIDUE 4OX A 363
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: D_ALA_DEHYDRATASE (A:256-268)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_ALA_DEHYDRATASE
PS00169
Delta-aminolevulinic acid dehydratase active site.
HEM2_YEAST
256-268
1
A:256-268
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Exons
(1, 1)
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All Exons
Exon 1.1 (A:1-340)
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1: Boundary -/1.1
2: Boundary 1.1/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGL040C
1
YGL040C.1
VII:420561-419533
1029
HEM2_YEAST
1-342
342
1
A:1-340
340
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SCOP Domains
(1, 1)
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1a: SCOP_d1gjpa_ (A:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
(36)
Protein domain
:
5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
(21)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(11)
1a
d1gjpa_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1gjpA00 (A:1-340)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Baker's yeast (Saccharomyces cerevisiae)
(49)
1a
1gjpA00
A:1-340
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Pfam Domains
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Chain A
Asymmetric Unit 1
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