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1GIM
Asym. Unit
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Asym.Unit (107 KB)
Biol.Unit 1 (201 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA COLI COMPLEXED WITH GDP, IMP, HADACIDIN, NO3-, AND MG2+. DATA COLLECTED AT 100K (PH 6.5)
Authors
:
B. W. Poland, H. J. Fromm, R. B. Honzatko
Date
:
15 Jun 96 (Deposition) - 23 Dec 96 (Release) - 27 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Purine Nucleotide Biosynthesis, Ligase, Synthetase, Gtp-Hydrolyzing Enzymes
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. W. Poland, H. J. Fromm, R. B. Honzatko
Crystal Structures Of Adenylosuccinate Synthetase From Escherichia Coli Complexed With Gdp, Imp Hadacidin, No3-, And Mg2+.
J. Mol. Biol. V. 264 1013 1996
(for further references see the
PDB file header
)
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Hetero Components
(5, 5)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2a: HADACIDIN (HDAa)
3a: INOSINIC ACID (IMPa)
4a: MAGNESIUM ION (MGa)
5a: NITRATE ION (NO3a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
1
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
HDA
1
Ligand/Ion
HADACIDIN
3
IMP
1
Ligand/Ion
INOSINIC ACID
4
MG
1
Ligand/Ion
MAGNESIUM ION
5
NO3
1
Ligand/Ion
NITRATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: ASP (UNKNOWN)
7: GNS (UNKNOWN)
8: IMP (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:13 , GLY A:40 , GDP A:432 , NO3 A:433 , HDA A:438
BINDING SITE FOR RESIDUE MG A 435
2
AC2
SOFTWARE
GLY A:12 , ASP A:13 , LYS A:16 , ALA A:39 , GLY A:40 , HIS A:41 , ALA A:223 , GLN A:224 , GDP A:432 , MG A:435 , HDA A:438 , IMP A:440
BINDING SITE FOR RESIDUE NO3 A 433
3
AC3
SOFTWARE
ASP A:13 , ASN A:38 , GLY A:40 , THR A:129 , GLY A:298 , ALA A:299 , THR A:300 , THR A:301 , ARG A:303 , ARG A:305 , NO3 A:433 , MG A:435 , IMP A:440
BINDING SITE FOR RESIDUE HDA A 438
4
AC4
SOFTWARE
TRP A:11 , ASP A:13 , ASN A:38 , ALA A:39 , GLY A:127 , THR A:128 , THR A:129 , ARG A:143 , GLN A:224 , LEU A:228 , VAL A:238 , THR A:239 , VAL A:273 , GLY A:274 , ARG A:303 , NO3 A:433 , HDA A:438 , HOH A:584 , HOH A:587 , HOH A:601 , HOH A:610 , HOH A:784
BINDING SITE FOR RESIDUE IMP A 440
5
AC5
SOFTWARE
ASP A:13 , GLU A:14 , GLY A:15 , LYS A:16 , GLY A:17 , GLY A:40 , HIS A:41 , THR A:42 , ARG A:305 , LYS A:331 , ASP A:333 , SER A:414 , GLY A:416 , PRO A:417 , NO3 A:433 , MG A:435 , HOH A:574 , HOH A:600 , HOH A:666 , HOH A:705 , HOH A:801
BINDING SITE FOR RESIDUE GDP A 432
6
ASP
UNKNOWN
ARG A:305 , THR A:301 , ARG A:303
THESE RESIDUES MAKE UP THE GUANINE NUCLEOTIDE BINDING SITE ON ADENYLOSUCCINATE SYNTHETASE.
7
GNS
UNKNOWN
ASP A:13 , GLU A:14 , GLY A:15 , LYS A:16 , GLY A:17 , LYS A:18 , LYS A:331 , LEU A:332 , ASP A:333 , SER A:414 , THR A:415 , GLY A:416 , PRO A:417
THESE RESIDUES MAKE UP THE GUANINE NUCLEOTIDE BINDING SITE ON ADENYLOSUCCINATE SYNTHETASE.
8
IMP
UNKNOWN
ASN A:38 , THR A:129 , ARG A:143 , GLN A:224 , THR A:239 , VAL A:273
THESE RESIDUES MAKE UP THE GUANINE NUCLEOTIDE BINDING SITE ON ADENYLOSUCCINATE SYNTHETASE.
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ADENYLOSUCCIN_SYN_1 (A:10-17)
2: ADENYLOSUCCIN_SYN_2 (A:132-143)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADENYLOSUCCIN_SYN_1
PS01266
Adenylosuccinate synthetase GTP-binding site.
PURA_ECOLI
11-18
1
A:10-17
2
ADENYLOSUCCIN_SYN_2
PS00513
Adenylosuccinate synthetase active site.
PURA_ECOLI
133-144
1
A:132-143
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1gima_ (A:)
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(
)
(
)
Folds
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(
)
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(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
Adenylosuccinate synthetase, PurA
(35)
Escherichia coli [TaxId: 562]
(23)
1a
d1gima_
A:
[
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1gimA01 (A:1-100,A:201-265)
2a: CATH_1gimA03 (A:266-431)
3a: CATH_1gimA02 (A:101-200)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Adenylosuccinate Synthetase; Chain A, domain 1
(36)
Homologous Superfamily
:
Adenylosuccinate Synthetase, subunit A, domain 1
(36)
Escherichia coli. Organism_taxid: 562. Strain: pur a strain h1238.
(7)
1a
1gimA01
A:1-100,A:201-265
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Adenylosuccinate Synthetase; Chain A, domain 3
(36)
Homologous Superfamily
:
Adenylosuccinate Synthetase, subunit A, domain 3
(36)
Escherichia coli. Organism_taxid: 562. Strain: pur a strain h1238.
(7)
2a
1gimA03
A:266-431
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Adenylosuccinate Synthetase, subunit A; domain 2
(36)
Homologous Superfamily
:
Adenylosuccinate Synthetase, subunit A, domain 2
(36)
Escherichia coli. Organism_taxid: 562. Strain: pur a strain h1238.
(7)
3a
1gimA02
A:101-200
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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