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1GIE
Theor. Model
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Theoretical Model (43 KB)
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(1)
Title
:
COLLAGEN-LIKE DOMAIN DELETED RAT SURFACTANT PROTEIN A (SP-A)
Authors
:
N. Palaniyar, F. X. Mccormack, F. Possmayer, G. Harauz
Date
:
24 Jan 01 (Deposition) - 31 Jan 01 (Release) - 31 Jan 01 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
Sp-A:Phospholipid Mololayer Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Palaniyar, F. X. Mccormack, F. Possmayer, G. Harauz
Three-Dimensional Structure Of Rat Surfactant Protein A Trimers In Association With Phospholipid Monolayers.
Biochemistry V. 39 6310 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
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1: C_TYPE_LECTIN_2 (A:41-154)
2: C_TYPE_LECTIN_1 (A:131-153)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
SFTPA_RAT
134-247
1
A:41-154
2
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
SFTPA_RAT
224-246
1
A:131-153
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Exons
(3, 3)
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All Exons
Exon 1.2 (A:1-7)
Exon 1.4 (A:8-31)
Exon 1.5 (A:31-155 (gaps))
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1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000047870
1
ENSRNOE00000343643
chr16:
17570887-17570917
31
SFTPA_RAT
-
0
0
-
-
1.2
ENSRNOT00000047870
2
ENSRNOE00000317514
chr16:
17571511-17571707
197
SFTPA_RAT
1-58
58
1
A:1-7
7
1.3
ENSRNOT00000047870
3
ENSRNOE00000108375
chr16:
17571895-17572014
120
SFTPA_RAT
58-98
41
0
-
-
1.4
ENSRNOT00000047870
4
ENSRNOE00000108787
chr16:
17572890-17572967
78
SFTPA_RAT
98-124
27
1
A:8-31
24
1.5
ENSRNOT00000047870
5
ENSRNOE00000109185
chr16:
17573209-17574389
1181
SFTPA_RAT
124-248
125
1
A:31-155 (gaps)
126
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Chain A
Asymmetric Unit 1
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