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1GH0
Biol. Unit 1
Info
Asym.Unit (670 KB)
Biol.Unit 1 (331 KB)
Biol.Unit 2 (331 KB)
Biol.Unit 3 (652 KB)
Biol.Unit 4 (651 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF C-PHYCOCYANIN FROM SPIRULINA PLATENSIS
Authors
:
D. -C. Liang, W. -R. Chang, X. -Q. Wang
Date
:
29 Oct 00 (Deposition) - 06 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Biol. Unit 4: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X (1x)
Keywords
:
C-Phycocyanin From Spirulina Platensis, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Q. Wang, L. N. Li, W. R. Chang, J. P. Zhang, L. L. Gui, B. J. Guo, D. C. Liang
Structure Of C-Phycocyanin From Spirulina Platensis At 2. 2 A Resolution: A Novel Monoclinic Crystal Form For Phycobiliproteins In Phycobilisomes.
Acta Crystallogr. , Sect. D V. 57 784 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 24)
Info
All Hetero Components
1a: PHYCOCYANOBILIN (CYCa)
1aa: PHYCOCYANOBILIN (CYCaa)
1ab: PHYCOCYANOBILIN (CYCab)
1ac: PHYCOCYANOBILIN (CYCac)
1ad: PHYCOCYANOBILIN (CYCad)
1ae: PHYCOCYANOBILIN (CYCae)
1af: PHYCOCYANOBILIN (CYCaf)
1ag: PHYCOCYANOBILIN (CYCag)
1ah: PHYCOCYANOBILIN (CYCah)
1ai: PHYCOCYANOBILIN (CYCai)
1aj: PHYCOCYANOBILIN (CYCaj)
1b: PHYCOCYANOBILIN (CYCb)
1c: PHYCOCYANOBILIN (CYCc)
1d: PHYCOCYANOBILIN (CYCd)
1e: PHYCOCYANOBILIN (CYCe)
1f: PHYCOCYANOBILIN (CYCf)
1g: PHYCOCYANOBILIN (CYCg)
1h: PHYCOCYANOBILIN (CYCh)
1i: PHYCOCYANOBILIN (CYCi)
1j: PHYCOCYANOBILIN (CYCj)
1k: PHYCOCYANOBILIN (CYCk)
1l: PHYCOCYANOBILIN (CYCl)
1m: PHYCOCYANOBILIN (CYCm)
1n: PHYCOCYANOBILIN (CYCn)
1o: PHYCOCYANOBILIN (CYCo)
1p: PHYCOCYANOBILIN (CYCp)
1q: PHYCOCYANOBILIN (CYCq)
1r: PHYCOCYANOBILIN (CYCr)
1s: PHYCOCYANOBILIN (CYCs)
1t: PHYCOCYANOBILIN (CYCt)
1u: PHYCOCYANOBILIN (CYCu)
1v: PHYCOCYANOBILIN (CYCv)
1w: PHYCOCYANOBILIN (CYCw)
1x: PHYCOCYANOBILIN (CYCx)
1y: PHYCOCYANOBILIN (CYCy)
1z: PHYCOCYANOBILIN (CYCz)
2a: N-METHYL ASPARAGINE (MENa)
2b: N-METHYL ASPARAGINE (MENb)
2c: N-METHYL ASPARAGINE (MENc)
2d: N-METHYL ASPARAGINE (MENd)
2e: N-METHYL ASPARAGINE (MENe)
2f: N-METHYL ASPARAGINE (MENf)
2g: N-METHYL ASPARAGINE (MENg)
2h: N-METHYL ASPARAGINE (MENh)
2i: N-METHYL ASPARAGINE (MENi)
2j: N-METHYL ASPARAGINE (MENj)
2k: N-METHYL ASPARAGINE (MENk)
2l: N-METHYL ASPARAGINE (MENl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CYC
18
Ligand/Ion
PHYCOCYANOBILIN
2
MEN
6
Mod. Amino Acid
N-METHYL ASPARAGINE
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:66 , PRO A:72 , ASN A:73 , TYR A:74 , ALA A:75 , ARG A:79 , LYS A:83 , CYS A:84 , ARG A:86 , ASP A:87 , TYR A:110 , TYR A:129 , HOH A:1087 , HOH A:1088 , ARG D:57 , ILE D:67 , THR D:75 , HOH D:1156
BINDING SITE FOR RESIDUE CYC A 1084
02
AC2
SOFTWARE
LEU B:66 , MEN B:72 , ALA B:73 , ARG B:78 , ALA B:81 , CYS B:82 , ARG B:84 , ASP B:85 , ILE B:88 , ARG B:108 , LEU B:113 , LEU B:120 , THR B:122 , SER B:126 , HOH B:1175
BINDING SITE FOR RESIDUE CYC B 1082
03
AC3
SOFTWARE
PHE A:28 , ASN B:35 , ASP B:39 , VAL B:40 , VAL B:142 , ASN B:143 , ASP B:144 , ILE B:148 , THR B:149 , PRO B:150 , GLY B:151 , CYS B:153 , HOH B:1165 , HOH B:1183 , HOH B:1201 , GLN K:33 , ASP K:145 , VAL K:148 , HOH K:1086
BINDING SITE FOR RESIDUE CYC B 1153
04
AC4
SOFTWARE
VAL C:59 , PRO C:72 , ASN C:73 , TYR C:74 , ALA C:75 , ARG C:79 , LYS C:83 , CYS C:84 , ARG C:86 , ASP C:87 , TYR C:90 , TYR C:110 , TYR C:129 , HOH C:1092 , HOH C:1112 , ARG F:57 , ILE F:67 , THR F:75 , HOH F:1156
BINDING SITE FOR RESIDUE CYC C 1084
05
AC5
SOFTWARE
MEN D:72 , ALA D:73 , ARG D:78 , ALA D:81 , CYS D:82 , ARG D:84 , ASP D:85 , ILE D:88 , ARG D:108 , LEU D:113 , LEU D:120 , THR D:122 , SER D:126 , HOH D:1187
BINDING SITE FOR RESIDUE CYC D 1082
06
AC6
SOFTWARE
ASN D:35 , LYS D:36 , ASP D:39 , VAL D:142 , ASN D:143 , ASP D:144 , ILE D:148 , THR D:149 , GLY D:151 , CYS D:153 , HOH D:1183 , ARG I:32 , GLN I:33 , ASP I:145 , VAL I:148
BINDING SITE FOR RESIDUE CYC D 1153
07
AC7
SOFTWARE
ARG B:57 , ILE B:67 , THR B:75 , HOH B:1191 , PRO E:72 , ASN E:73 , TYR E:74 , ALA E:75 , LYS E:83 , CYS E:84 , ARG E:86 , ASP E:87 , TYR E:110 , PHE E:122 , TRP E:128 , TYR E:129 , HOH E:1090 , HOH E:1095
BINDING SITE FOR RESIDUE CYC E 1084
08
AC8
SOFTWARE
LEU F:66 , MEN F:72 , ALA F:73 , ARG F:77 , ARG F:78 , ALA F:81 , CYS F:82 , ARG F:84 , ASP F:85 , ILE F:88 , ARG F:108 , LEU F:113 , LEU F:120 , SER F:126 , HOH F:1177
BINDING SITE FOR RESIDUE CYC F 1082
09
AC9
SOFTWARE
PHE E:28 , ASN F:35 , LEU F:38 , ASP F:39 , VAL F:40 , ARG F:43 , VAL F:142 , ASN F:143 , ASP F:144 , THR F:149 , PRO F:150 , GLY F:151 , CYS F:153 , ARG G:32 , GLN G:33 , ASP G:145 , VAL G:148 , HOH G:1089
BINDING SITE FOR RESIDUE CYC F 1153
10
BC1
SOFTWARE
PRO G:72 , ASN G:73 , TYR G:74 , ALA G:75 , ARG G:79 , LYS G:83 , CYS G:84 , ARG G:86 , ASP G:87 , TYR G:90 , TYR G:110 , PHE G:122 , TRP G:128 , TYR G:129 , HOH G:1090 , HOH G:1099 , ARG J:57 , ILE J:67 , THR J:75
BINDING SITE FOR RESIDUE CYC G 1084
11
BC2
SOFTWARE
LEU H:66 , MEN H:72 , ALA H:73 , ARG H:77 , ARG H:78 , ALA H:81 , CYS H:82 , ARG H:84 , ASP H:85 , MET H:86 , ILE H:88 , ARG H:108 , LEU H:113 , LEU H:120 , THR H:122 , SER H:126 , HOH H:1182
BINDING SITE FOR RESIDUE CYC H 1082
12
BC3
SOFTWARE
PRO A:64 , ARG E:32 , GLN E:33 , ASP E:145 , VAL E:148 , HOH E:1121 , ASN H:35 , LYS H:36 , ASP H:39 , VAL H:40 , VAL H:142 , ASP H:144 , ILE H:148 , THR H:149 , PRO H:150 , GLY H:151 , CYS H:153 , HOH H:1164 , HOH H:1192
BINDING SITE FOR RESIDUE CYC H 1153
13
BC4
SOFTWARE
VAL I:59 , THR I:66 , PRO I:72 , ASN I:73 , TYR I:74 , ALA I:75 , ARG I:79 , LYS I:83 , CYS I:84 , ARG I:86 , ASP I:87 , TYR I:90 , TYR I:110 , TRP I:128 , HOH I:1087 , HOH I:1113 , ARG L:57 , ILE L:67 , THR L:75 , HOH L:1162
BINDING SITE FOR RESIDUE CYC I 1084
14
BC5
SOFTWARE
LEU J:66 , MEN J:72 , ALA J:73 , ARG J:77 , ARG J:78 , ALA J:81 , CYS J:82 , ARG J:84 , ASP J:85 , ILE J:88 , ARG J:108 , LEU J:113 , THR J:122 , PRO J:123 , SER J:126
BINDING SITE FOR RESIDUE CYC J 1082
15
BC6
SOFTWARE
GLN C:33 , ASP C:145 , VAL C:148 , GLU C:149 , PHE I:28 , ASN J:35 , ASP J:39 , VAL J:40 , ARG J:43 , VAL J:142 , ASN J:143 , ASP J:144 , ILE J:148 , THR J:149 , PRO J:150 , GLY J:151 , CYS J:153 , HOH J:1160 , HOH J:1177 , LYS U:35
BINDING SITE FOR RESIDUE CYC J 1153
16
BC7
SOFTWARE
ARG H:57 , ILE H:67 , THR H:75 , HOH H:1161 , VAL K:59 , THR K:66 , PRO K:72 , ASN K:73 , TYR K:74 , ALA K:75 , LYS K:83 , CYS K:84 , ARG K:86 , ASP K:87 , TYR K:90 , TYR K:110 , PHE K:122 , TRP K:128 , HOH K:1087 , HOH K:1093
BINDING SITE FOR RESIDUE CYC K 1084
17
BC8
SOFTWARE
MEN L:72 , ALA L:73 , ARG L:78 , ALA L:81 , CYS L:82 , ARG L:84 , ASP L:85 , ILE L:88 , ARG L:108 , LEU L:113 , LEU L:120 , THR L:122 , SER L:126 , HOH L:1180 , HOH L:1181
BINDING SITE FOR RESIDUE CYC L 1082
18
BC9
SOFTWARE
GLN A:33 , ASP A:145 , VAL A:148 , HOH A:1108 , ILE K:24 , PHE K:28 , ASN L:35 , ASP L:39 , VAL L:40 , ARG L:43 , ASP L:144 , ILE L:148 , THR L:149 , PRO L:150 , GLY L:151 , CYS L:153 , HOH L:1160
BINDING SITE FOR RESIDUE CYC L 1153
19
CC6
SOFTWARE
SER C:143 , ASN P:35 , ASP P:39 , ARG P:43 , VAL P:142 , ASN P:143 , ASP P:144 , ILE P:148 , THR P:149 , PRO P:150 , GLY P:151 , CYS P:153 , HOH P:1159 , GLN U:33 , ASP U:145 , VAL U:148
BINDING SITE FOR RESIDUE CYC P 1153
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 24)
Info
All SCOP Domains
1a: SCOP_d1gh0a_ (A:)
1b: SCOP_d1gh0c_ (C:)
1c: SCOP_d1gh0e_ (E:)
1d: SCOP_d1gh0g_ (G:)
1e: SCOP_d1gh0i_ (I:)
1f: SCOP_d1gh0k_ (K:)
1g: SCOP_d1gh0m_ (M:)
1h: SCOP_d1gh0o_ (O:)
1i: SCOP_d1gh0q_ (Q:)
1j: SCOP_d1gh0s_ (S:)
1k: SCOP_d1gh0u_ (U:)
1l: SCOP_d1gh0w_ (W:)
2a: SCOP_d1gh0b_ (B:)
2b: SCOP_d1gh0d_ (D:)
2c: SCOP_d1gh0f_ (F:)
2d: SCOP_d1gh0h_ (H:)
2e: SCOP_d1gh0j_ (J:)
2f: SCOP_d1gh0l_ (L:)
2g: SCOP_d1gh0n_ (N:)
2h: SCOP_d1gh0p_ (P:)
2i: SCOP_d1gh0r_ (R:)
2j: SCOP_d1gh0t_ (T:)
2k: SCOP_d1gh0v_ (V:)
2l: SCOP_d1gh0x_ (X:)
View:
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)
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)
(
)
Superfamilies
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(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Phycocyanin-like phycobilisome proteins
(65)
Protein domain
:
Phycocyanin alpha subunit
(16)
Spirulina platensis [TaxId: 118562]
(2)
1a
d1gh0a_
A:
1b
d1gh0c_
C:
1c
d1gh0e_
E:
1d
d1gh0g_
G:
1e
d1gh0i_
I:
1f
d1gh0k_
K:
1g
d1gh0m_
M:
1h
d1gh0o_
O:
1i
d1gh0q_
Q:
1j
d1gh0s_
S:
1k
d1gh0u_
U:
1l
d1gh0w_
W:
Protein domain
:
Phycocyanin beta subunit
(15)
Spirulina platensis [TaxId: 118562]
(2)
2a
d1gh0b_
B:
2b
d1gh0d_
D:
2c
d1gh0f_
F:
2d
d1gh0h_
H:
2e
d1gh0j_
J:
2f
d1gh0l_
L:
2g
d1gh0n_
N:
2h
d1gh0p_
P:
2i
d1gh0r_
R:
2j
d1gh0t_
T:
2k
d1gh0v_
V:
2l
d1gh0x_
X:
[
close SCOP info
]
CATH Domains
(1, 24)
Info
all CATH domains
1a: CATH_1gh0B00 (B:1-172)
1b: CATH_1gh0D00 (D:1-172)
1c: CATH_1gh0V00 (V:1-172)
1d: CATH_1gh0X00 (X:1-172)
1e: CATH_1gh0A00 (A:1-162)
1f: CATH_1gh0C00 (C:1-162)
1g: CATH_1gh0E00 (E:1-162)
1h: CATH_1gh0G00 (G:1-162)
1i: CATH_1gh0I00 (I:1-162)
1j: CATH_1gh0K00 (K:1-162)
1k: CATH_1gh0M00 (M:1-162)
1l: CATH_1gh0O00 (O:1-162)
1m: CATH_1gh0F00 (F:1-172)
1n: CATH_1gh0Q00 (Q:1-162)
1o: CATH_1gh0S00 (S:1-162)
1p: CATH_1gh0U00 (U:1-162)
1q: CATH_1gh0W00 (W:1-162)
1r: CATH_1gh0H00 (H:1-172)
1s: CATH_1gh0J00 (J:1-172)
1t: CATH_1gh0L00 (L:1-172)
1u: CATH_1gh0N00 (N:1-172)
1v: CATH_1gh0P00 (P:1-172)
1w: CATH_1gh0R00 (R:1-172)
1x: CATH_1gh0T00 (T:1-172)
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Phycocyanins
(32)
Arthrospira platensis. Organism_taxid: 118562.
(2)
1a
1gh0B00
B:1-172
1b
1gh0D00
D:1-172
1c
1gh0V00
V:1-172
1d
1gh0X00
X:1-172
1e
1gh0A00
A:1-162
1f
1gh0C00
C:1-162
1g
1gh0E00
E:1-162
1h
1gh0G00
G:1-162
1i
1gh0I00
I:1-162
1j
1gh0K00
K:1-162
1k
1gh0M00
M:1-162
1l
1gh0O00
O:1-162
1m
1gh0F00
F:1-172
1n
1gh0Q00
Q:1-162
1o
1gh0S00
S:1-162
1p
1gh0U00
U:1-162
1q
1gh0W00
W:1-162
1r
1gh0H00
H:1-172
1s
1gh0J00
J:1-172
1t
1gh0L00
L:1-172
1u
1gh0N00
N:1-172
1v
1gh0P00
P:1-172
1w
1gh0R00
R:1-172
1x
1gh0T00
T:1-172
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Asym.Unit (670 KB)
Header - Asym.Unit
Biol.Unit 1 (331 KB)
Header - Biol.Unit 1
Biol.Unit 2 (331 KB)
Header - Biol.Unit 2
Biol.Unit 3 (652 KB)
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