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1GGO
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (279 KB)
Biol.Unit 2 (278 KB)
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(1)
Title
:
T453A MUTANT OF PYRUVATE, PHOSPHATE DIKINASE
Authors
:
Z. Li, O. Herzberg
Date
:
29 Aug 00 (Deposition) - 10 Jan 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Biol. Unit 2: A (2x)
Keywords
:
Transferase, Phosphotransferase, Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wei, Z. Li, D. Ye, O. Herzberg, D. Dunaway-Mariano
Identification Of Domain-Domain Docking Sites Within Clostridium Symbiosum Pyruvate Phosphate Dikinase By Amino Acid Replacement.
J. Biol. Chem. V. 275 41156 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
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Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:22 , PRO A:100 , GLY A:101 , MET A:103 , ARG A:337
BINDING SITE FOR RESIDUE SO4 A 1001
2
AC2
SOFTWARE
ARG A:617 , ASP A:620 , HOH A:1042
BINDING SITE FOR RESIDUE SO4 A 1002
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PEP_ENZYMES_PHOS_SITE (A:450-461)
2: PEP_ENZYMES_2 (A:761-779)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEP_ENZYMES_PHOS_SITE
PS00370
PEP-utilizing enzymes phosphorylation site signature.
PPDK_CLOSY
450-461
1
A:450-461
2
PEP_ENZYMES_2
PS00742
PEP-utilizing enzymes signature 2.
PPDK_CLOSY
761-779
1
A:761-779
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1ggoa3 (A:2-376)
2a: SCOP_d1ggoa2 (A:377-505)
3a: SCOP_d1ggoa1 (A:510-874)
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(
)
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)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
Pyruvate phosphate dikinase, N-terminal domain
(10)
Protein domain
:
Pyruvate phosphate dikinase, N-terminal domain
(10)
Clostridium symbiosum [TaxId: 1512]
(7)
1a
d1ggoa3
A:2-376
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
The swivelling beta/beta/alpha domain
(136)
Superfamily
:
Phosphohistidine domain
(22)
Family
:
Pyruvate phosphate dikinase, central domain
(11)
Protein domain
:
Pyruvate phosphate dikinase, central domain
(11)
Clostridium symbiosum [TaxId: 1512]
(8)
2a
d1ggoa2
A:377-505
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Phosphoenolpyruvate/pyruvate domain
(92)
Family
:
Pyruvate phosphate dikinase, C-terminal domain
(10)
Protein domain
:
Pyruvate phosphate dikinase, C-terminal domain
(10)
Clostridium symbiosum [TaxId: 1512]
(7)
3a
d1ggoa1
A:510-874
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CATH Domains
(6, 6)
Info
all CATH domains
1a: CATH_1ggoA06 (A:244-341)
2a: CATH_1ggoA01 (A:2-109,A:199-243)
3a: CATH_1ggoA03 (A:383-505)
4a: CATH_1ggoA04 (A:532-873)
5a: CATH_1ggoA02 (A:342-382,A:510-531)
6a: CATH_1ggoA05 (A:110-198)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Clostridium symbiosum. Organism_taxid: 1512. Strain: jm 101.
(2)
1a
1ggoA06
A:244-341
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Clostridium symbiosum. Organism_taxid: 1512. Strain: jm 101.
(2)
2a
1ggoA01
A:2-109,A:199-243
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
Glucose Oxidase; domain 1
(52)
Homologous Superfamily
:
Phosphohistidine domains of PEP-utilising enzymes
(24)
Clostridium symbiosum. Organism_taxid: 1512. Strain: jm 101.
(2)
3a
1ggoA03
A:383-505
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Phosphoenolpyruvate-binding domains
(67)
Clostridium symbiosum. Organism_taxid: 1512. Strain: jm 101.
(2)
4a
1ggoA04
A:532-873
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Pyruvate Phosphate di-kinase; domain 2
(10)
Homologous Superfamily
:
Pyruvate Phosphate Dikinase, domain 2
(10)
Clostridium symbiosum. Organism_taxid: 1512. Strain: jm 101.
(2)
5a
1ggoA02
A:342-382,A:510-531
Architecture
:
Up-down Bundle
(3216)
Topology
:
Acyl-CoA Binding Protein
(47)
Homologous Superfamily
:
[code=1.20.80.30, no name defined]
(10)
Clostridium symbiosum. Organism_taxid: 1512. Strain: jm 101.
(2)
6a
1ggoA05
A:110-198
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (146 KB)
Header - Asym.Unit
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