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Getting 'Exon' information from database.
1GGL
Asym. Unit
Info
Asym.Unit (53 KB)
Biol.Unit 1 (25 KB)
Biol.Unit 2 (25 KB)
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(1)
Title
:
HUMAN CELLULAR RETINOL BINDING PROTEIN III
Authors
:
V. Calderone, G. Zanotti, C. Folli, S. Ottonello, A. Bolchi, M. Stoppini, R. Berni
Date
:
23 Aug 00 (Deposition) - 07 Mar 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.31
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Carrier, Retinol Binding Protein, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Folli, V. Calderone, S. Ottonello, A. Bolchi, G. Zanotti, M. Stoppini, R. Berni
Identification, Retinoid Binding, And X-Ray Analysis Of A Human Retinol-Binding Protein.
Proc. Natl. Acad. Sci. Usa V. 98 3710 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(2, 2)
Info
All Sites
1: LBB (AUTHOR)
2: LBS (AUTHOR)
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Label:
No.
Name
Evidence
Residues
Description
1
LBB
AUTHOR
LYS B:40 , THR B:53 , ARG B:58 , TRP B:106 , HIS B:108
RETINOL-BINDING SITE
2
LBS
AUTHOR
LYS A:40 , THR A:53 , ARG A:58 , TRP A:106 , HIS A:108
RETINOL-BINDING SITE
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_049013 (D18N, chain A/B, )
2: VAR_034445 (E69Q, chain A/B, )
3: VAR_034446 (M114L, chain A/B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_049013
D
19
N
RET5_HUMAN
Polymorphism
10963
A/B
D
18
N
2
UniProt
VAR_034445
E
70
Q
RET5_HUMAN
Polymorphism
7969705
A/B
E
69
Q
3
UniProt
VAR_034446
M
115
L
RET5_HUMAN
Polymorphism
2290237
A/B
M
114
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Exons
(4, 8)
Info
All Exons
Exon 1.1 (A:1-24 | B:1-24)
Exon 1.2 (A:24-83 | B:24-83)
Exon 1.3 (A:84-117 | B:84-117)
Exon 1.4 (A:118-134 | B:118-134)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000266560
1
ENSE00001293625
chr12:
7281487-7281299
189
RET5_HUMAN
1-25
25
2
A:1-24
B:1-24
24
24
1.2
ENST00000266560
2
ENSE00000937011
chr12:
7281014-7280836
179
RET5_HUMAN
25-84
60
2
A:24-83
B:24-83
60
60
1.3
ENST00000266560
3
ENSE00000937012
chr12:
7277326-7277225
102
RET5_HUMAN
85-118
34
2
A:84-117
B:84-117
34
34
1.4
ENST00000266560
4
ENSE00001328243
chr12:
7276770-7276283
488
RET5_HUMAN
119-135
17
2
A:118-134
B:118-134
17
17
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ggla_ (A:)
1b: SCOP_d1gglb_ (B:)
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Protein Domains
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipocalins
(514)
Superfamily
:
Lipocalins
(514)
Family
:
Fatty acid binding protein-like
(183)
Protein domain
:
Cellular retinol-binding protein III
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1ggla_
A:
1b
d1gglb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1gglA00 (A:1-134)
1b: CATH_1gglB00 (B:1-134)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Lipocalin
(526)
Homologous Superfamily
:
[code=2.40.128.20, no name defined]
(352)
Human (Homo sapiens)
(91)
1a
1gglA00
A:1-134
1b
1gglB00
B:1-134
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (53 KB)
Header - Asym.Unit
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