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1GGF
Asym. Unit
Info
Asym.Unit (510 KB)
Biol.Unit 1 (501 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CATALASE HPII FROM ESCHERICHIA COLI, VARIANT HIS128ASN, COMPLEX WITH HYDROGEN PEROXIDE.
Authors
:
W. R. Melik-Adamyan, J. Bravo, X. Carpena, J. Switala, M. J. Mate, I. Fita, P. C. Loewen
Date
:
21 Aug 00 (Deposition) - 30 Aug 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.28
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta Barrel, Alpha Helical Domain, Flavodoxin Like Domain, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Melik-Adamyan, J. Bravo, X. Carpena, J. Switala, M. J. Mate, I. Fita, P. C. Loewen
Substrate Flow In Catalases Deduced From The Crystal Structures Of Active Site Variants Of Hpii From Escherichia Coli.
Proteins V. 44 270 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 17)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
1b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
1c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
1d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
2a: HYDROGEN PEROXIDE (PEOa)
2b: HYDROGEN PEROXIDE (PEOb)
2c: HYDROGEN PEROXIDE (PEOc)
2d: HYDROGEN PEROXIDE (PEOd)
2e: HYDROGEN PEROXIDE (PEOe)
2f: HYDROGEN PEROXIDE (PEOf)
2g: HYDROGEN PEROXIDE (PEOg)
2h: HYDROGEN PEROXIDE (PEOh)
2i: HYDROGEN PEROXIDE (PEOi)
2j: HYDROGEN PEROXIDE (PEOj)
2k: HYDROGEN PEROXIDE (PEOk)
2l: HYDROGEN PEROXIDE (PEOl)
2m: HYDROGEN PEROXIDE (PEOm)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
PEO
13
Ligand/Ion
HYDROGEN PEROXIDE
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:125 , ILE A:126 , VAL A:127 , ASN A:128 , ARG A:165 , GLY A:184 , VAL A:199 , GLY A:200 , ASN A:201 , PHE A:214 , ILE A:274 , HIS A:275 , PHE A:391 , LEU A:407 , GLY A:410 , ARG A:411 , SER A:414 , TYR A:415 , THR A:418 , GLN A:419 , ARG A:422 , PEO A:3001 , HOH A:3026 , HOH A:3071 , HOH A:3098 , ASP D:118
BINDING SITE FOR RESIDUE HEM A 760
02
AC2
SOFTWARE
ARG B:125 , ILE B:126 , VAL B:127 , ASN B:128 , ARG B:165 , VAL B:199 , GLY B:200 , ASN B:201 , PHE B:214 , HIS B:275 , PHE B:391 , LEU B:407 , ARG B:411 , SER B:414 , TYR B:415 , THR B:418 , GLN B:419 , ARG B:422 , PEO B:4002 , HOH B:4067 , HOH B:4112 , HOH B:4140 , ASP C:118
BINDING SITE FOR RESIDUE HEM B 760
03
AC3
SOFTWARE
ASP B:118 , ARG C:125 , ILE C:126 , VAL C:127 , ASN C:128 , ARG C:165 , GLY C:184 , VAL C:199 , GLY C:200 , ASN C:201 , PHE C:214 , HIS C:275 , PHE C:391 , LEU C:407 , ARG C:411 , SER C:414 , TYR C:415 , THR C:418 , GLN C:419 , ARG C:422 , PEO C:5002 , HOH C:5097 , HOH C:5141 , HOH C:5168
BINDING SITE FOR RESIDUE HEM C 760
04
AC4
SOFTWARE
ASP A:118 , ARG D:125 , ILE D:126 , VAL D:127 , ASN D:128 , ARG D:165 , GLY D:184 , VAL D:199 , GLY D:200 , ASN D:201 , PHE D:214 , ILE D:274 , HIS D:275 , PHE D:391 , LEU D:407 , GLY D:410 , ARG D:411 , SER D:414 , TYR D:415 , THR D:418 , GLN D:419 , ARG D:422 , PEO D:6001 , HOH D:6148 , HOH D:6190 , HOH D:6218
BINDING SITE FOR RESIDUE HEM D 760
05
AC5
SOFTWARE
VAL A:127 , ASN A:128 , HEM A:760 , PEO A:3002
BINDING SITE FOR RESIDUE PEO A 3001
06
AC6
SOFTWARE
ASN A:128 , VAL A:169 , ASN A:201 , PHE A:206 , PEO A:3001
BINDING SITE FOR RESIDUE PEO A 3002
07
AC7
SOFTWARE
GLN A:233 , SER A:234 , ALA A:235 , GLU A:530 , HOH A:3240
BINDING SITE FOR RESIDUE PEO A 3003
08
AC8
SOFTWARE
SER A:421 , HOH A:3009 , ASP D:118 , HIS D:119 , GLU D:120 , ARG D:121
BINDING SITE FOR RESIDUE PEO D 3004
09
AC9
SOFTWARE
VAL B:127 , ASN B:128 , PHE B:214 , HEM B:760 , PEO B:4001
BINDING SITE FOR RESIDUE PEO B 4002
10
BC1
SOFTWARE
ASN B:128 , VAL B:169 , GLY B:184 , ASN B:201 , PEO B:4002
BINDING SITE FOR RESIDUE PEO B 4001
11
BC2
SOFTWARE
GLN B:233 , SER B:234 , ALA B:235 , GLU B:530 , HOH B:4099 , HOH B:4269
BINDING SITE FOR RESIDUE PEO B 4003
12
BC3
SOFTWARE
VAL C:127 , ASN C:128 , VAL C:169 , HEM C:760 , PEO C:5001
BINDING SITE FOR RESIDUE PEO C 5002
13
BC4
SOFTWARE
ASN C:128 , VAL C:169 , ASN C:201 , PHE C:206 , PEO C:5002
BINDING SITE FOR RESIDUE PEO C 5001
14
BC5
SOFTWARE
GLN C:233 , SER C:234 , ALA C:235 , TRP C:304 , GLU C:530 , HOH C:5127 , HOH C:5313
BINDING SITE FOR RESIDUE PEO C 5003
15
BC6
SOFTWARE
VAL D:127 , ASN D:128 , VAL D:169 , HEM D:760 , PEO D:6002
BINDING SITE FOR RESIDUE PEO D 6001
16
BC7
SOFTWARE
ASN D:128 , VAL D:169 , ASN D:201 , PHE D:206 , PEO D:6001
BINDING SITE FOR RESIDUE PEO D 6002
17
BC8
SOFTWARE
GLN D:233 , SER D:234 , ALA D:235 , TRP D:304 , GLU D:530 , HOH D:6177 , HOH D:6354
BINDING SITE FOR RESIDUE PEO D 6003
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: CATALASE_3 (A:77-568,B:77-568,C:77-568,D:77-56...)
2: CATALASE_2 (A:117-133,B:117-133,C:117-133,D:11...)
3: CATALASE_1 (A:411-419,B:411-419,C:411-419,D:41...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CATALASE_3
PS51402
catalase family profile.
CATE_ECOLI
77-568
4
A:77-568
B:77-568
C:77-568
D:77-568
2
CATALASE_2
PS00438
Catalase proximal active site signature.
CATE_ECOLI
117-133
4
A:117-133
B:117-133
C:117-133
D:117-133
3
CATALASE_1
PS00437
Catalase proximal heme-ligand signature.
CATE_ECOLI
411-419
4
A:411-419
B:411-419
C:411-419
D:411-419
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1ggfa1 (A:598-753)
1b: SCOP_d1ggfb1 (B:598-753)
1c: SCOP_d1ggfc1 (C:598-753)
1d: SCOP_d1ggfd1 (D:598-753)
2a: SCOP_d1ggfa2 (A:27-597)
2b: SCOP_d1ggfb2 (B:27-597)
2c: SCOP_d1ggfc2 (C:27-597)
2d: SCOP_d1ggfd2 (D:27-597)
View:
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Classes
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Catalase, C-terminal domain
(17)
Protein domain
:
Catalase, C-terminal domain
(17)
Escherichia coli, HPII [TaxId: 562]
(16)
1a
d1ggfa1
A:598-753
1b
d1ggfb1
B:598-753
1c
d1ggfc1
C:598-753
1d
d1ggfd1
D:598-753
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Heme-dependent catalase-like
(82)
Superfamily
:
Heme-dependent catalase-like
(82)
Family
:
Heme-dependent catalases
(80)
Protein domain
:
Catalase II
(16)
Escherichia coli, HPII [TaxId: 562]
(16)
2a
d1ggfa2
A:27-597
2b
d1ggfb2
B:27-597
2c
d1ggfc2
C:27-597
2d
d1ggfd2
D:27-597
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Chain C
Chain D
Asymmetric Unit 1
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