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1GG4
Asym. Unit
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Asym.Unit (144 KB)
Biol.Unit 1 (72 KB)
Biol.Unit 2 (71 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ESCHERICHIA COLI UDPMURNAC-TRIPEPTIDE D-ALANYL-D-ALANINE-ADDING ENZYME (MURF) AT 2.3 ANGSTROM RESOLUTION
Authors
:
Y. Yan, S. Munshi, Z. Chen
Date
:
12 Jul 00 (Deposition) - 20 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha/Beta Sheet, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Yan, S. Munshi, B. Leiting, M. S. Anderson, J. Chrzas, Z. Chen
Crystal Structure Of Escherichia Coli Udpmurnac-Tripeptide D-Alanyl-D-Alanine-Adding Enzyme (Murf) At 2. 3 A Resolution.
J. Mol. Biol. V. 304 435 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 18)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
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No.
Name
Count
Type
Full Name
1
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_MURF_ECOLI_001 (A788T, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_MURF_ECOLI_001
*
A
288
T
MURF_ECOLI
---
---
A
B
A
288
788
T
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1gg4a1 (A:313-447)
1b: SCOP_d1gg4b1 (B:813-947)
2a: SCOP_d1gg4a3 (A:1-98)
2b: SCOP_d1gg4b3 (B:501-598)
3a: SCOP_d1gg4a4 (A:99-312)
3b: SCOP_d1gg4b4 (B:599-812)
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
MurD-like peptide ligases, peptide-binding domain
(32)
Superfamily
:
MurD-like peptide ligases, peptide-binding domain
(32)
Family
:
MurCDEF C-terminal domain
(13)
Protein domain
:
UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
(1)
Escherichia coli [TaxId: 562]
(1)
1a
d1gg4a1
A:313-447
1b
d1gg4b1
B:813-947
Fold
:
MurF and HprK N-domain-like
(5)
Superfamily
:
MurE/MurF N-terminal domain
(2)
Family
:
MurE/MurF N-terminal domain
(2)
Protein domain
:
UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
(1)
Escherichia coli [TaxId: 562]
(1)
2a
d1gg4a3
A:1-98
2b
d1gg4b3
B:501-598
Fold
:
Ribokinase-like
(226)
Superfamily
:
MurD-like peptide ligases, catalytic domain
(32)
Family
:
MurCDEF
(23)
Protein domain
:
UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
(1)
Escherichia coli [TaxId: 562]
(1)
3a
d1gg4a4
A:99-312
3b
d1gg4b4
B:599-812
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1gg4A02 (A:81-311)
1b: CATH_1gg4B02 (B:581-811)
2a: CATH_1gg4A03 (A:2-80)
2b: CATH_1gg4B03 (B:502-580)
3a: CATH_1gg4A01 (A:312-447)
3b: CATH_1gg4B01 (B:812-938)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase
(109)
Homologous Superfamily
:
[code=3.40.1190.10, no name defined]
(36)
Escherichia coli. Organism_taxid: 562.
(11)
1a
1gg4A02
A:81-311
1b
1gg4B02
B:581-811
Topology
:
Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase; Chain: A, domain 1
(9)
Homologous Superfamily
:
[code=3.40.1390.10, no name defined]
(2)
Escherichia coli. Organism_taxid: 562.
(1)
2a
1gg4A03
A:2-80
2b
1gg4B03
B:502-580
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
[code=3.90.190.20, no name defined]
(34)
Escherichia coli. Organism_taxid: 562.
(11)
3a
1gg4A01
A:312-447
3b
1gg4B01
B:812-938
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Pfam Domains
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Asym.Unit (144 KB)
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