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1GG1
Asym. Unit
Info
Asym.Unit (227 KB)
Biol.Unit 1 (221 KB)
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(1)
Title
:
CRYSTAL STRUCTURE ANALYSIS OF DAHP SYNTHASE IN COMPLEX WITH MN2+ AND 2-PHOSPHOGLYCOLATE
Authors
:
T. Wagner, I. A. Shumilin, R. Bauerle, R. H. Kretsinger
Date
:
04 Aug 00 (Deposition) - 04 Oct 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Beta-Alpha-Barrel, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Wagner, I. A. Shumilin, R. Bauerle, R. H. Kretsinger
Structure Of 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Escherichia Coli: Comparison Of The Mn(2+)*2-Phosphoglycolate And The Pb(2+)*2-Phosphoenolpyruvate Complexes And Implications For Catalysis.
J. Mol. Biol. V. 301 389 2000
(for further references see the
PDB file header
)
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
2a: 2-PHOSPHOGLYCOLIC ACID (PGAa)
2b: 2-PHOSPHOGLYCOLIC ACID (PGAb)
2c: 2-PHOSPHOGLYCOLIC ACID (PGAc)
2d: 2-PHOSPHOGLYCOLIC ACID (PGAd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
4
Ligand/Ion
MANGANESE (II) ION
2
PGA
4
Ligand/Ion
2-PHOSPHOGLYCOLIC ACID
3
SO4
8
Ligand/Ion
SULFATE ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:92 , TYR A:94 , LYS A:97 , GLY A:163 , ALA A:164 , ARG A:165 , LYS A:186 , ARG A:234 , HIS A:268 , GLU A:302 , MN A:371 , HOH A:1389 , HOH A:1415 , HOH A:1424 , HOH A:1453
BINDING SITE FOR RESIDUE PGA A 372
02
AC2
SOFTWARE
ARG B:92 , LYS B:97 , GLY B:163 , ALA B:164 , ARG B:165 , LYS B:186 , ARG B:234 , HIS B:268 , GLU B:302 , MN B:371 , HOH B:2375 , HOH B:2385 , HOH B:2438 , HOH B:2472 , HOH B:2546
BINDING SITE FOR RESIDUE PGA B 372
03
AC3
SOFTWARE
ARG C:92 , TYR C:94 , LYS C:97 , GLY C:163 , ALA C:164 , ARG C:165 , LYS C:186 , ARG C:234 , HIS C:268 , GLU C:302 , MN C:371 , HOH C:3375 , HOH C:3417 , HOH C:3433
BINDING SITE FOR RESIDUE PGA C 372
04
AC4
SOFTWARE
ARG D:92 , TYR D:94 , LYS D:97 , GLY D:163 , ALA D:164 , ARG D:165 , LYS D:186 , ARG D:234 , HIS D:268 , GLU D:302 , MN D:371 , HOH D:4375 , HOH D:4424 , HOH D:4434 , HOH D:4445
BINDING SITE FOR RESIDUE PGA D 372
05
AC5
SOFTWARE
CYS A:61 , LYS A:97 , HIS A:268 , GLU A:302 , ASP A:326 , PGA A:372
BINDING SITE FOR RESIDUE MN A 371
06
AC6
SOFTWARE
CYS B:61 , HIS B:268 , GLU B:302 , ASP B:326 , PGA B:372 , HOH B:2375
BINDING SITE FOR RESIDUE MN B 371
07
AC7
SOFTWARE
CYS C:61 , HIS C:268 , GLU C:302 , ASP C:326 , PGA C:372 , HOH C:3375
BINDING SITE FOR RESIDUE MN C 371
08
AC8
SOFTWARE
CYS D:61 , HIS D:268 , GLU D:302 , ASP D:326 , PGA D:372 , HOH D:4375
BINDING SITE FOR RESIDUE MN D 371
09
AC9
SOFTWARE
ARG A:99 , THR A:100 , HOH A:1451
BINDING SITE FOR RESIDUE SO4 A 1373
10
BC1
SOFTWARE
ARG B:99 , THR B:100 , HOH B:2411 , HOH B:2596
BINDING SITE FOR RESIDUE SO4 B 2373
11
BC2
SOFTWARE
ARG C:99 , THR C:100 , HOH C:3418
BINDING SITE FOR RESIDUE SO4 C 3373
12
BC3
SOFTWARE
ARG D:99 , THR D:100 , HOH D:4433
BINDING SITE FOR RESIDUE SO4 D 4373
13
BC4
SOFTWARE
THR A:192 , ILE A:193 , LYS A:194
BINDING SITE FOR RESIDUE SO4 A 1374
14
BC5
SOFTWARE
THR B:192 , ILE B:193 , LYS B:194
BINDING SITE FOR RESIDUE SO4 B 2374
15
BC6
SOFTWARE
THR C:192 , ILE C:193 , LYS C:194
BINDING SITE FOR RESIDUE SO4 C 3374
16
BC7
SOFTWARE
THR D:192 , ILE D:193 , LYS D:194
BINDING SITE FOR RESIDUE SO4 D 4374
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1gg1a_ (A:)
1b: SCOP_d1gg1b_ (B:)
1c: SCOP_d1gg1c_ (C:)
1d: SCOP_d1gg1d_ (D:)
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Protein Domains
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)
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I DAHP synthetase
(87)
Protein domain
:
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
(16)
Escherichia coli, phenylalanine-regulated isozyme [TaxId: 562]
(4)
1a
d1gg1a_
A:
1b
d1gg1b_
B:
1c
d1gg1c_
C:
1d
d1gg1d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1gg1A00 (A:7-349)
1b: CATH_1gg1C00 (C:8-349)
1c: CATH_1gg1D00 (D:8-350)
1d: CATH_1gg1B00 (B:8-350)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Escherichia coli. Organism_taxid: 562.
(44)
1a
1gg1A00
A:7-349
1b
1gg1C00
C:8-349
1c
1gg1D00
D:8-350
1d
1gg1B00
B:8-350
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (227 KB)
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Header - Biol.Unit 1
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