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1GCZ
Asym. Unit
Info
Asym.Unit (66 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
MACROPHAGE MIGRATION INHIBITORY FACTOR (MIF) COMPLEXED WITH INHIBITOR.
Authors
:
N. Katayama, H. Kurihara
Date
:
24 Aug 00 (Deposition) - 21 Feb 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Protein-Inhibitor Complex, Mif, Macrophage Migration Inhibitory Factor, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Orita, S. Yamamoto, N. Katayama, M. Aoki, K. Takayama, Y. Yamagiwa, N. Seki, H. Suzuki, H. Kurihara, H. Sakashita, M. Takeuchi, S. Fujita, T. Yamada, A. Tanaka
Coumarin And Chromen-4-One Analogues As Tautomerase Inhibitors Of Macrophage Migration Inhibitory Factor: Discovery And X-Ray Crystallography.
J. Med. Chem. V. 44 540 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 16)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
3a: 7-HYDROXY-2-OXO-CHROMENE-3-CARBOXY... (YZ9a)
3b: 7-HYDROXY-2-OXO-CHROMENE-3-CARBOXY... (YZ9b)
3c: 7-HYDROXY-2-OXO-CHROMENE-3-CARBOXY... (YZ9c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
3
Ligand/Ion
CITRIC ACID
2
SO4
10
Ligand/Ion
SULFATE ION
3
YZ9
3
Ligand/Ion
7-HYDROXY-2-OXO-CHROMENE-3-CARBOXYLIC ACID ETHYL ESTER
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:117 , HIS A:118 , HOH A:616 , ARG C:11
BINDING SITE FOR RESIDUE SO4 A 553
02
AC2
SOFTWARE
HIS A:118 , ARG C:73 , HOH C:605
BINDING SITE FOR RESIDUE SO4 A 554
03
AC3
SOFTWARE
ARG B:11 , HOH B:610 , HIS C:117 , HIS C:118
BINDING SITE FOR RESIDUE SO4 C 555
04
AC4
SOFTWARE
ALA B:70 , ARG B:73 , HIS C:118
BINDING SITE FOR RESIDUE SO4 B 556
05
AC5
SOFTWARE
GLY A:68 , GLY A:69 , ALA A:70 , GLN A:71
BINDING SITE FOR RESIDUE SO4 A 557
06
AC6
SOFTWARE
GLY C:68 , GLY C:69 , ALA C:70 , GLN C:71
BINDING SITE FOR RESIDUE SO4 C 558
07
AC7
SOFTWARE
ARG B:86 , GLY C:65 , LYS C:66
BINDING SITE FOR RESIDUE SO4 C 559
08
AC8
SOFTWARE
GLY A:65 , LYS A:66 , GLU C:85 , ARG C:86
BINDING SITE FOR RESIDUE SO4 A 560
09
AC9
SOFTWARE
ARG A:86 , HIS C:118
BINDING SITE FOR RESIDUE SO4 A 561
10
BC1
SOFTWARE
GLY A:50 , ASP B:92 , TRP C:108 , ASN C:109
BINDING SITE FOR RESIDUE SO4 A 562
11
BC2
SOFTWARE
ASN A:6 , LEU A:58 , SER A:60 , ASN A:97 , TYR A:99 , HOH A:639 , ILE B:4 , HIS B:40 , HIS B:62 , CIT B:551 , HOH B:637 , CIT C:552 , HOH C:584
BINDING SITE FOR RESIDUE CIT A 550
12
BC3
SOFTWARE
CIT A:550 , ASN B:6 , LEU B:58 , SER B:60 , ASN B:97 , TYR B:99 , HOH B:637 , ILE C:4 , HIS C:40 , HIS C:62 , CIT C:552 , HOH C:584 , HOH C:622
BINDING SITE FOR RESIDUE CIT B 551
13
BC4
SOFTWARE
ILE A:4 , HIS A:40 , HIS A:62 , CIT A:550 , HOH A:639 , CIT B:551 , ASN C:6 , SER C:60 , ASN C:97 , TYR C:99 , HOH C:584 , HOH C:622
BINDING SITE FOR RESIDUE CIT C 552
14
BC5
SOFTWARE
PRO A:1 , MET A:2 , LYS A:32 , TYR A:36 , HIS A:62 , SER A:63 , ILE A:64 , VAL A:106 , SER C:20 , TYR C:95 , ASN C:97 , HOH C:625 , HOH C:664 , HOH C:682
BINDING SITE FOR RESIDUE YZ9 A 900
15
BC6
SOFTWARE
GLN B:24 , TYR B:95 , ASN B:97 , PRO C:1 , MET C:2 , LYS C:32 , HIS C:62 , SER C:63 , ILE C:64 , VAL C:106 , PHE C:113
BINDING SITE FOR RESIDUE YZ9 C 901
16
BC7
SOFTWARE
TYR A:95 , ASN A:97 , PRO B:1 , MET B:2 , LYS B:32 , TYR B:36 , HIS B:62 , SER B:63 , ILE B:64 , VAL B:106 , PHE B:113 , GLU C:54
BINDING SITE FOR RESIDUE YZ9 B 902
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: MIF (A:54-68,B:54-68,C:54-68)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MIF
PS01158
Macrophage migration inhibitory factor family signature.
MIF_HUMAN
55-69
3
A:54-68
B:54-68
C:54-68
[
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Exons
(3, 9)
Info
All Exons
Exon 1.1a (A:1-35 | B:1-35 | C:1-35)
Exon 1.2b (A:36-93 | B:36-93 | C:36-93)
Exon 1.2d (A:93-114 | B:93-114 | C:93-114)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.2d
4: Boundary 1.2d/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000215754
1a
ENSE00001922200
chr22:
24236191-24236769
579
MIF_HUMAN
1-36
36
3
A:1-35
B:1-35
C:1-35
35
35
35
1.2b
ENST00000215754
2b
ENSE00000651496
chr22:
24236959-24237131
173
MIF_HUMAN
37-94
58
3
A:36-93
B:36-93
C:36-93
58
58
58
1.2d
ENST00000215754
2d
ENSE00001839840
chr22:
24237227-24237413
187
MIF_HUMAN
94-115
22
3
A:93-114
B:93-114
C:93-114
22
22
22
[
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]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1gcza_ (A:)
1b: SCOP_d1gczb_ (B:)
1c: SCOP_d1gczc_ (C:)
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(
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Tautomerase/MIF
(104)
Superfamily
:
Tautomerase/MIF
(104)
Family
:
MIF-related
(58)
Protein domain
:
Microphage migration inhibition factor (MIF)
(55)
Human (Homo sapiens) [TaxId: 9606]
(46)
1a
d1gcza_
A:
1b
d1gczb_
B:
1c
d1gczc_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1gczA00 (A:1-118)
1b: CATH_1gczC00 (C:1-118)
1c: CATH_1gczB00 (B:1-114)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Macrophage Migration Inhibitory Factor
(40)
Homologous Superfamily
:
Macrophage Migration Inhibitory Factor
(40)
Human (Homo sapiens)
(25)
1a
1gczA00
A:1-118
1b
1gczC00
C:1-118
1c
1gczB00
B:1-114
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Chain C
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