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1GC3
Biol. Unit 2
Info
Asym.Unit (487 KB)
Biol.Unit 1 (127 KB)
Biol.Unit 2 (126 KB)
Biol.Unit 3 (126 KB)
Biol.Unit 4 (126 KB)
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(1)
Title
:
THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2 COMPLEXED WITH TRYPTOPHAN
Authors
:
H. Ura, T. Nakai, K. Hirotsu, S. Kuramitsu
Date
:
18 Jul 00 (Deposition) - 05 Sep 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Aminotransferase, Dual-Substrate Enzyme, Pyridoxal Enzyme, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ura, T. Nakai, S. Kawaguchi, I. Miyahara, K. Hirotsu, S. Kuramitsu
Substrate Recognition Mechanism Of Thermophilic Dual-Substrate Enzyme
J. Biochem. (Tokyo) V. 130 89 2001
(for further references see the
PDB file header
)
[
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]
Hetero Components
(2, 4)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
1c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
1d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
1e: PYRIDOXAL-5'-PHOSPHATE (PLPe)
1f: PYRIDOXAL-5'-PHOSPHATE (PLPf)
1g: PYRIDOXAL-5'-PHOSPHATE (PLPg)
1h: PYRIDOXAL-5'-PHOSPHATE (PLPh)
2a: TRYPTOPHAN (TRPa)
2b: TRYPTOPHAN (TRPb)
2c: TRYPTOPHAN (TRPc)
2d: TRYPTOPHAN (TRPd)
2e: TRYPTOPHAN (TRPe)
2f: TRYPTOPHAN (TRPf)
2g: TRYPTOPHAN (TRPg)
2h: TRYPTOPHAN (TRPh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
2
TRP
2
Mod. Amino Acid
TRYPTOPHAN
[
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Sites
(4, 4)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: BC2 (SOFTWARE)
4: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
VAL C:1016 , ASN C:1020 , GLY C:1039 , LYS C:1234 , TYR C:1322 , ARG C:1361 , PLP C:1413 , TYR D:1564
BINDING SITE FOR RESIDUE TRP C 1414
2
AC4
SOFTWARE
TYR C:1064 , VAL D:1516 , ASN D:1520 , THR D:1537 , GLY D:1539 , ASN D:1675 , LYS D:1734 , TYR D:1822 , ARG D:1861 , PLP D:1913
BINDING SITE FOR RESIDUE TRP D 1914
3
BC2
SOFTWARE
GLY C:1100 , SER C:1101 , TRP C:1125 , ASN C:1175 , ASP C:1203 , TYR C:1206 , ALA C:1233 , LYS C:1234 , ARG C:1242 , TYR C:1322 , TRP C:1414 , TYR D:1564
BINDING SITE FOR RESIDUE PLP C 1413
4
BC3
SOFTWARE
TYR C:1064 , GLY D:1600 , SER D:1601 , ASN D:1671 , ASN D:1675 , ASP D:1703 , TYR D:1706 , LYS D:1734 , ARG D:1742 , TRP D:1914
BINDING SITE FOR RESIDUE PLP D 1913
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_1 (C:1231-1244,D:1731-1744)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_1
PS00105
Aminotransferases class-I pyridoxal-phosphate attachment site.
AAT_THET8
231-244
2
-
-
C:1231-1244
D:1731-1744
-
-
-
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1gc3a_ (A:)
1b: SCOP_d1gc3b_ (B:)
1c: SCOP_d1gc3c_ (C:)
1d: SCOP_d1gc3d_ (D:)
1e: SCOP_d1gc3e_ (E:)
1f: SCOP_d1gc3f_ (F:)
1g: SCOP_d1gc3g_ (G:)
1h: SCOP_d1gc3h_ (H:)
View:
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Classes
(
)
(
)
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
AAT-like
(184)
Protein domain
:
Aspartate aminotransferase, AAT
(112)
Thermus thermophilus [TaxId: 274]
(9)
1a
d1gc3a_
A:
1b
d1gc3b_
B:
1c
d1gc3c_
C:
1d
d1gc3d_
D:
1e
d1gc3e_
E:
1f
d1gc3f_
F:
1g
d1gc3g_
G:
1h
d1gc3h_
H:
[
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1gc3A02 (A:63-281)
1b: CATH_1gc3B02 (B:563-781)
1c: CATH_1gc3C02 (C:1063-1281)
1d: CATH_1gc3D02 (D:1563-1781)
1e: CATH_1gc3E02 (E:2063-2281)
1f: CATH_1gc3F02 (F:2563-2781)
1g: CATH_1gc3G02 (G:3063-3281)
1h: CATH_1gc3H02 (H:3563-3781)
2a: CATH_1gc3A01 (A:1-62,A:282-381)
2b: CATH_1gc3G01 (G:3001-3062,G:3282-3381)
2c: CATH_1gc3H01 (H:3501-3562,H:3782-3881)
2d: CATH_1gc3B01 (B:501-562,B:782-881)
2e: CATH_1gc3C01 (C:1001-1062,C:1282-1381)
2f: CATH_1gc3D01 (D:1501-1562,D:1782-1881)
2g: CATH_1gc3E01 (E:2001-2062,E:2282-2381)
2h: CATH_1gc3F01 (F:2501-2562,F:2782-2881)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(11)
1a
1gc3A02
A:63-281
1b
1gc3B02
B:563-781
1c
1gc3C02
C:1063-1281
1d
1gc3D02
D:1563-1781
1e
1gc3E02
E:2063-2281
1f
1gc3F02
F:2563-2781
1g
1gc3G02
G:3063-3281
1h
1gc3H02
H:3563-3781
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(9)
2a
1gc3A01
A:1-62,A:282-381
2b
1gc3G01
G:3001-3062,G:3282-3381
2c
1gc3H01
H:3501-3562,H:3782-3881
2d
1gc3B01
B:501-562,B:782-881
2e
1gc3C01
C:1001-1062,C:1282-1381
2f
1gc3D01
D:1501-1562,D:1782-1881
2g
1gc3E01
E:2001-2062,E:2282-2381
2h
1gc3F01
F:2501-2562,F:2782-2881
[
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Pfam Domains
(0, 0)
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Chain C
Chain D
Asymmetric Unit 1
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Asym.Unit (487 KB)
Header - Asym.Unit
Biol.Unit 1 (127 KB)
Header - Biol.Unit 1
Biol.Unit 2 (126 KB)
Header - Biol.Unit 2
Biol.Unit 3 (126 KB)
Header - Biol.Unit 3
Biol.Unit 4 (126 KB)
Header - Biol.Unit 4
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