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1GC3
Asym. Unit
Info
Asym.Unit (487 KB)
Biol.Unit 1 (127 KB)
Biol.Unit 2 (126 KB)
Biol.Unit 3 (126 KB)
Biol.Unit 4 (126 KB)
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(1)
Title
:
THERMUS THERMOPHILUS ASPARTATE AMINOTRANSFERASE TETRA MUTANT 2 COMPLEXED WITH TRYPTOPHAN
Authors
:
H. Ura, T. Nakai, K. Hirotsu, S. Kuramitsu
Date
:
18 Jul 00 (Deposition) - 05 Sep 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Aminotransferase, Dual-Substrate Enzyme, Pyridoxal Enzyme, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ura, T. Nakai, S. Kawaguchi, I. Miyahara, K. Hirotsu, S. Kuramitsu
Substrate Recognition Mechanism Of Thermophilic Dual-Substrate Enzyme
J. Biochem. (Tokyo) V. 130 89 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
1b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
1c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
1d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
1e: PYRIDOXAL-5'-PHOSPHATE (PLPe)
1f: PYRIDOXAL-5'-PHOSPHATE (PLPf)
1g: PYRIDOXAL-5'-PHOSPHATE (PLPg)
1h: PYRIDOXAL-5'-PHOSPHATE (PLPh)
2a: TRYPTOPHAN (TRPa)
2b: TRYPTOPHAN (TRPb)
2c: TRYPTOPHAN (TRPc)
2d: TRYPTOPHAN (TRPd)
2e: TRYPTOPHAN (TRPe)
2f: TRYPTOPHAN (TRPf)
2g: TRYPTOPHAN (TRPg)
2h: TRYPTOPHAN (TRPh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PLP
8
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
2
TRP
8
Mod. Amino Acid
TRYPTOPHAN
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:16 , ASN A:20 , THR A:37 , ALA A:38 , GLY A:39 , GLU A:40 , ASN A:175 , TYR A:322 , ARG A:361 , PLP A:413
BINDING SITE FOR RESIDUE TRP A 414
02
AC2
SOFTWARE
TYR A:64 , THR A:265 , VAL B:516 , GLY B:539 , ASN B:675 , LYS B:734 , TYR B:822 , ARG B:861 , PLP B:913
BINDING SITE FOR RESIDUE TRP A 914
03
AC3
SOFTWARE
VAL C:1016 , ASN C:1020 , GLY C:1039 , LYS C:1234 , TYR C:1322 , ARG C:1361 , PLP C:1413 , TYR D:1564
BINDING SITE FOR RESIDUE TRP C 1414
04
AC4
SOFTWARE
TYR C:1064 , VAL D:1516 , ASN D:1520 , THR D:1537 , GLY D:1539 , ASN D:1675 , LYS D:1734 , TYR D:1822 , ARG D:1861 , PLP D:1913
BINDING SITE FOR RESIDUE TRP D 1914
05
AC5
SOFTWARE
GLY E:2039 , TYR E:2322 , ARG E:2361 , PLP E:2413
BINDING SITE FOR RESIDUE TRP E 2414
06
AC6
SOFTWARE
TYR E:2064 , VAL F:2516 , GLY F:2539 , LYS F:2734 , TYR F:2822 , ARG F:2861 , PLP F:2913
BINDING SITE FOR RESIDUE TRP E 2914
07
AC7
SOFTWARE
VAL G:3016 , ASN G:3020 , THR G:3037 , GLY G:3039 , GLU G:3040 , TRP G:3125 , ASN G:3175 , ARG G:3361 , PLP G:3413 , TYR H:3564
BINDING SITE FOR RESIDUE TRP G 3414
08
AC8
SOFTWARE
VAL H:3516 , ASN H:3520 , THR H:3537 , GLY H:3539 , ASN H:3675 , TYR H:3822 , ARG H:3861 , PLP H:3913
BINDING SITE FOR RESIDUE TRP H 3914
09
AC9
SOFTWARE
GLY A:99 , GLY A:100 , SER A:101 , ASN A:171 , ASN A:175 , ASP A:203 , TYR A:206 , LYS A:234 , ARG A:242 , TYR A:322 , TRP A:414 , TYR B:564
BINDING SITE FOR RESIDUE PLP A 413
10
BC1
SOFTWARE
TYR A:64 , TRP A:914 , GLY B:600 , SER B:601 , TRP B:625 , ASN B:671 , ASN B:675 , ASP B:703 , TYR B:706 , LYS B:734 , ARG B:742
BINDING SITE FOR RESIDUE PLP B 913
11
BC2
SOFTWARE
GLY C:1100 , SER C:1101 , TRP C:1125 , ASN C:1175 , ASP C:1203 , TYR C:1206 , ALA C:1233 , LYS C:1234 , ARG C:1242 , TYR C:1322 , TRP C:1414 , TYR D:1564
BINDING SITE FOR RESIDUE PLP C 1413
12
BC3
SOFTWARE
TYR C:1064 , GLY D:1600 , SER D:1601 , ASN D:1671 , ASN D:1675 , ASP D:1703 , TYR D:1706 , LYS D:1734 , ARG D:1742 , TRP D:1914
BINDING SITE FOR RESIDUE PLP D 1913
13
BC4
SOFTWARE
GLY E:2099 , GLY E:2100 , SER E:2101 , TRP E:2125 , ASN E:2175 , ASP E:2203 , TYR E:2206 , ALA E:2233 , ARG E:2242 , TYR E:2322 , TRP E:2414 , TYR F:2564
BINDING SITE FOR RESIDUE PLP E 2413
14
BC5
SOFTWARE
TYR E:2064 , TRP E:2914 , GLY F:2600 , SER F:2601 , TRP F:2625 , ASN F:2675 , ASP F:2703 , TYR F:2706 , LYS F:2734 , ARG F:2742
BINDING SITE FOR RESIDUE PLP F 2913
15
BC6
SOFTWARE
GLY G:3100 , SER G:3101 , TRP G:3125 , ASN G:3171 , ASN G:3175 , ASP G:3203 , TYR G:3206 , ARG G:3242 , TRP G:3414 , TYR H:3564
BINDING SITE FOR RESIDUE PLP G 3413
16
BC7
SOFTWARE
TYR G:3064 , GLY H:3599 , GLY H:3600 , SER H:3601 , TRP H:3625 , ASN H:3675 , ASP H:3703 , TYR H:3706 , LYS H:3734 , ARG H:3742 , TYR H:3822 , TRP H:3914
BINDING SITE FOR RESIDUE PLP H 3913
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_1 (A:231-244,B:731-744,C:1231-1244,D:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_1
PS00105
Aminotransferases class-I pyridoxal-phosphate attachment site.
AAT_THET8
231-244
8
A:231-244
B:731-744
C:1231-1244
D:1731-1744
E:2231-2244
F:2731-2744
G:3231-3244
H:3731-3744
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1gc3a_ (A:)
1b: SCOP_d1gc3b_ (B:)
1c: SCOP_d1gc3c_ (C:)
1d: SCOP_d1gc3d_ (D:)
1e: SCOP_d1gc3e_ (E:)
1f: SCOP_d1gc3f_ (F:)
1g: SCOP_d1gc3g_ (G:)
1h: SCOP_d1gc3h_ (H:)
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Classes
(
)
(
)
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
AAT-like
(184)
Protein domain
:
Aspartate aminotransferase, AAT
(112)
Thermus thermophilus [TaxId: 274]
(9)
1a
d1gc3a_
A:
1b
d1gc3b_
B:
1c
d1gc3c_
C:
1d
d1gc3d_
D:
1e
d1gc3e_
E:
1f
d1gc3f_
F:
1g
d1gc3g_
G:
1h
d1gc3h_
H:
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1gc3A02 (A:63-281)
1b: CATH_1gc3B02 (B:563-781)
1c: CATH_1gc3C02 (C:1063-1281)
1d: CATH_1gc3D02 (D:1563-1781)
1e: CATH_1gc3E02 (E:2063-2281)
1f: CATH_1gc3F02 (F:2563-2781)
1g: CATH_1gc3G02 (G:3063-3281)
1h: CATH_1gc3H02 (H:3563-3781)
2a: CATH_1gc3A01 (A:1-62,A:282-381)
2b: CATH_1gc3G01 (G:3001-3062,G:3282-3381)
2c: CATH_1gc3H01 (H:3501-3562,H:3782-3881)
2d: CATH_1gc3B01 (B:501-562,B:782-881)
2e: CATH_1gc3C01 (C:1001-1062,C:1282-1381)
2f: CATH_1gc3D01 (D:1501-1562,D:1782-1881)
2g: CATH_1gc3E01 (E:2001-2062,E:2282-2381)
2h: CATH_1gc3F01 (F:2501-2562,F:2782-2881)
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)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(11)
1a
1gc3A02
A:63-281
1b
1gc3B02
B:563-781
1c
1gc3C02
C:1063-1281
1d
1gc3D02
D:1563-1781
1e
1gc3E02
E:2063-2281
1f
1gc3F02
F:2563-2781
1g
1gc3G02
G:3063-3281
1h
1gc3H02
H:3563-3781
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Thermus thermophilus hb8. Organism_taxid: 300852. Strain: hb8.
(9)
2a
1gc3A01
A:1-62,A:282-381
2b
1gc3G01
G:3001-3062,G:3282-3381
2c
1gc3H01
H:3501-3562,H:3782-3881
2d
1gc3B01
B:501-562,B:782-881
2e
1gc3C01
C:1001-1062,C:1282-1381
2f
1gc3D01
D:1501-1562,D:1782-1881
2g
1gc3E01
E:2001-2062,E:2282-2381
2h
1gc3F01
F:2501-2562,F:2782-2881
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (487 KB)
Header - Asym.Unit
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