PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1GBQ
Asym. Unit
Info
Asym.Unit (22 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
SOLUTION NMR STRUCTURE OF THE GRB2 N-TERMINAL SH3 DOMAIN COMPLEXED WITH A TEN-RESIDUE PEPTIDE DERIVED FROM SOS DIRECT REFINEMENT AGAINST NOES, J-COUPLINGS, AND 1H AND 13C CHEMICAL SHIFTS, MINIMIZED AVERAGE STRUCTURE
Authors
:
M. Wittekind, C. Mapelli, V. Lee, V. Goldfarb, M. S. Friedrichs, C. A. Meyers, L. Mueller
Date
:
23 Dec 96 (Deposition) - 04 Sep 97 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B
Keywords
:
Complex (Signal Transduction/Peptide), Sh3 Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Wittekind, C. Mapelli, V. Lee, V. Goldfarb, M. S. Friedrichs, C. A. Meyers, L. Mueller
Solution Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos: Direct Refinement Against Noes, J-Couplings And 1H And 13C Chemical Shifts.
J. Mol. Biol. V. 267 933 1997
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: AMINO GROUP (NH2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
NH2
1
Mod. Amino Acid
AMINO GROUP
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
ARG B:10
BINDING SITE FOR RESIDUE NH2 B 11
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:1-57|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
GRB2_MOUSE
1-58
156-215
1
A:1-57
-
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.21 (B:0-11)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.20/1.21
2: Boundary 1.21/1.22
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSMUST00000068714
1
ENSMUSE00000358919
chr17:
80879793-80879177
617
SOS1_MOUSE
1-29
29
0
-
-
1.2
ENSMUST00000068714
2
ENSMUSE00000401901
chr17:
80859387-80859262
126
SOS1_MOUSE
30-71
42
0
-
-
1.3
ENSMUST00000068714
3
ENSMUSE00000140174
chr17:
80854523-80854392
132
SOS1_MOUSE
72-115
44
0
-
-
1.4
ENSMUST00000068714
4
ENSMUSE00000539699
chr17:
80853260-80853096
165
SOS1_MOUSE
116-170
55
0
-
-
1.5
ENSMUST00000068714
5
ENSMUSE00000140173
chr17:
80851530-80851321
210
SOS1_MOUSE
171-240
70
0
-
-
1.6
ENSMUST00000068714
6
ENSMUSE00000140175
chr17:
80848741-80848598
144
SOS1_MOUSE
241-288
48
0
-
-
1.7
ENSMUST00000068714
7
ENSMUSE00000140170
chr17:
80845052-80844942
111
SOS1_MOUSE
289-325
37
0
-
-
1.8
ENSMUST00000068714
8
ENSMUSE00000539693
chr17:
80844868-80844770
99
SOS1_MOUSE
326-358
33
0
-
-
1.9
ENSMUST00000068714
9
ENSMUSE00000140161
chr17:
80834362-80834235
128
SOS1_MOUSE
359-401
43
0
-
-
1.10
ENSMUST00000068714
10
ENSMUSE00000140166
chr17:
80833492-80832837
656
SOS1_MOUSE
401-620
220
0
-
-
1.11
ENSMUST00000068714
11
ENSMUSE00000458490
chr17:
80823551-80823470
82
SOS1_MOUSE
620-647
28
0
-
-
1.12
ENSMUST00000068714
12
ENSMUSE00000140165
chr17:
80822578-80822456
123
SOS1_MOUSE
647-688
42
0
-
-
1.13
ENSMUST00000068714
13
ENSMUSE00000251248
chr17:
80822125-80822022
104
SOS1_MOUSE
688-723
36
0
-
-
1.14
ENSMUST00000068714
14
ENSMUSE00000140164
chr17:
80819825-80819603
223
SOS1_MOUSE
723-797
75
0
-
-
1.15
ENSMUST00000068714
15
ENSMUSE00000140162
chr17:
80818468-80818349
120
SOS1_MOUSE
797-837
41
0
-
-
1.16
ENSMUST00000068714
16
ENSMUSE00000140167
chr17:
80814445-80814283
163
SOS1_MOUSE
837-891
55
0
-
-
1.17
ENSMUST00000068714
17
ENSMUSE00000140177
chr17:
80813056-80812939
118
SOS1_MOUSE
892-931
40
0
-
-
1.18
ENSMUST00000068714
18
ENSMUSE00000539690
chr17:
80808080-80807908
173
SOS1_MOUSE
931-988
58
0
-
-
1.19
ENSMUST00000068714
19
ENSMUSE00000140172
chr17:
80807702-80807586
117
SOS1_MOUSE
989-1027
39
0
-
-
1.20
ENSMUST00000068714
20
ENSMUSE00000251076
chr17:
80806298-80806031
268
SOS1_MOUSE
1028-1117
90
0
-
-
1.21
ENSMUST00000068714
21
ENSMUSE00000251053
chr17:
80799199-80799081
119
SOS1_MOUSE
1117-1156
40
1
B:0-11
12
1.22
ENSMUST00000068714
22
ENSMUSE00000656958
chr17:
80798012-80793092
4921
SOS1_MOUSE
1157-1319
163
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1gbqa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
(16)
Mouse (Mus musculus) [TaxId: 10090]
(5)
1a
d1gbqa_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1gbqA00 (A:1-57)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
House mouse (Mus musculus)
(29)
1a
1gbqA00
A:1-57
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (22 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1GBQ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
