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1GBN
Biol. Unit 3
Info
Asym.Unit (238 KB)
Biol.Unit 1 (233 KB)
Biol.Unit 2 (157 KB)
Biol.Unit 3 (157 KB)
Biol.Unit 4 (310 KB)
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(1)
Title
:
HUMAN ORNITHINE AMINOTRANSFERASE COMPLEXED WITH THE NEUROTOXIN GABACULINE
Authors
:
S. A. Shah, B. W. Shen, A. T. Brunger
Date
:
29 May 97 (Deposition) - 03 Jun 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C (2x)
Biol. Unit 4: A,B,C (2x)
Keywords
:
Transferase, Ornithine Aminotransferase, Urea Cycle, Pyridoxal-5'- Phosphate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. A. Shah, B. W. Shen, A. T. Brunger
Human Ornithine Aminotransferase Complexed With L-Canaline And Gabaculine: Structural Basis For Substrate Recognition.
Structure V. 5 1067 1997
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: 3-AMINOBENZOIC ACID (GABa)
2a: GABACULINE (GBCa)
2b: GABACULINE (GBCb)
3a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
3b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
3c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAB
-1
Ligand/Ion
3-AMINOBENZOIC ACID
2
GBC
2
Ligand/Ion
GABACULINE
3
PLP
2
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
TYR C:55 , TYR C:85 , PHE C:177 , GLU C:235 , LYS C:292 , SER C:321 , THR C:322 , PLP C:441 , HOH C:535
BINDING SITE FOR RESIDUE GBC C 440
2
AC6
SOFTWARE
GLY C:142 , VAL C:143 , PHE C:177 , TRP C:178 , GLU C:230 , ASP C:263 , ILE C:265 , GLN C:266 , LYS C:292 , THR C:322 , GBC C:440 , HOH C:443 , HOH C:467 , HOH C:482 , HOH C:491 , HOH C:521 , HOH C:541
BINDING SITE FOR RESIDUE PLP C 441
[
close Site info
]
SAPs(SNPs)/Variants
(28, 56)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_071924 (G51D, chain C, )
02: VAR_000565 (N54K, chain C, )
03: VAR_000566 (Y55H, chain C, )
04: VAR_000567 (N89K, chain C, )
05: VAR_015648 (Q90E, chain C, )
06: VAR_000568 (C93F, chain C, )
07: VAR_071925 (Q104R, chain C, )
08: VAR_000569 (R154L, chain C, )
09: VAR_000570 (R180T, chain C, )
10: VAR_071926 (P199Q, chain C, )
11: VAR_000572 (A226V, chain C, )
12: VAR_000573 (P241L, chain C, )
13: VAR_000574 (Y245C, chain C, )
14: VAR_000575 (R250P, chain C, )
15: VAR_000576 (T267I, chain C, )
16: VAR_000577 (A270P, chain C, )
17: VAR_000578 (R271K, chain C, )
18: VAR_071927 (E318K, chain C, )
19: VAR_000579 (H319Y, chain C, )
20: VAR_000580 (V332M, chain C, )
21: VAR_000581 (G353D, chain C, )
22: VAR_000582 (G375A, chain C, )
23: VAR_000583 (C394R, chain C, )
24: VAR_071928 (C394Y, chain C, )
25: VAR_000584 (L402P, chain C, )
26: VAR_000585 (P417L, chain C, )
27: VAR_071929 (I436N, chain C, )
28: VAR_000586 (L437F, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_071924
G
51
D
OAT_HUMAN
Disease (HOGA)
---
C
G
51
D
02
UniProt
VAR_000565
N
54
K
OAT_HUMAN
Disease (HOGA)
---
C
N
54
K
03
UniProt
VAR_000566
Y
55
H
OAT_HUMAN
Disease (HOGA)
---
C
Y
55
H
04
UniProt
VAR_000567
N
89
K
OAT_HUMAN
Disease (HOGA)
---
C
N
89
K
05
UniProt
VAR_015648
Q
90
E
OAT_HUMAN
Disease (HOGA)
---
C
Q
90
E
06
UniProt
VAR_000568
C
93
F
OAT_HUMAN
Disease (HOGA)
---
C
C
93
F
07
UniProt
VAR_071925
Q
104
R
OAT_HUMAN
Disease (HOGA)
---
C
Q
104
R
08
UniProt
VAR_000569
R
154
L
OAT_HUMAN
Disease (HOGA)
---
C
R
154
L
09
UniProt
VAR_000570
R
180
T
OAT_HUMAN
Disease (HOGA)
---
C
R
180
T
10
UniProt
VAR_071926
P
199
Q
OAT_HUMAN
Disease (HOGA)
---
C
P
199
Q
11
UniProt
VAR_000572
A
226
V
OAT_HUMAN
Disease (HOGA)
---
C
A
226
V
12
UniProt
VAR_000573
P
241
L
OAT_HUMAN
Disease (HOGA)
---
C
P
241
L
13
UniProt
VAR_000574
Y
245
C
OAT_HUMAN
Disease (HOGA)
---
C
Y
245
C
14
UniProt
VAR_000575
R
250
P
OAT_HUMAN
Disease (HOGA)
---
C
R
250
P
15
UniProt
VAR_000576
T
267
I
OAT_HUMAN
Disease (HOGA)
---
C
T
267
I
16
UniProt
VAR_000577
A
270
P
OAT_HUMAN
Disease (HOGA)
---
C
A
270
P
17
UniProt
VAR_000578
R
271
K
OAT_HUMAN
Disease (HOGA)
---
C
R
271
K
18
UniProt
VAR_071927
E
318
K
OAT_HUMAN
Disease (HOGA)
---
C
E
318
K
19
UniProt
VAR_000579
H
319
Y
OAT_HUMAN
Disease (HOGA)
---
C
H
319
Y
20
UniProt
VAR_000580
V
332
M
OAT_HUMAN
Disease (HOGA)
---
C
V
332
M
21
UniProt
VAR_000581
G
353
D
OAT_HUMAN
Disease (HOGA)
---
C
G
353
D
22
UniProt
VAR_000582
G
375
A
OAT_HUMAN
Disease (HOGA)
---
C
G
375
A
23
UniProt
VAR_000583
C
394
R
OAT_HUMAN
Disease (HOGA)
---
C
C
394
R
24
UniProt
VAR_071928
C
394
Y
OAT_HUMAN
Disease (HOGA)
---
C
C
394
Y
25
UniProt
VAR_000584
L
402
P
OAT_HUMAN
Disease (HOGA)
121965043
C
L
402
P
26
UniProt
VAR_000585
P
417
L
OAT_HUMAN
Disease (HOGA)
---
C
P
417
L
27
UniProt
VAR_071929
I
436
N
OAT_HUMAN
Disease (HOGA)
---
C
I
436
N
28
UniProt
VAR_000586
L
437
F
OAT_HUMAN
Disease (HOGA)
1800456
C
L
437
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: AA_TRANSFER_CLASS_3 (C:260-297)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_3
PS00600
Aminotransferases class-III pyridoxal-phosphate attachment site.
OAT_HUMAN
260-297
2
-
-
C:260-297
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1gbna_ (A:)
1b: SCOP_d1gbnb_ (B:)
1c: SCOP_d1gbnc_ (C:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Ornithine aminotransferase
(8)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1gbna_
A:
1b
d1gbnb_
B:
1c
d1gbnc_
C:
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1gbnA02 (A:94-343)
1b: CATH_1gbnB02 (B:94-343)
1c: CATH_1gbnC02 (C:94-343)
2a: CATH_1gbnA01 (A:38-93,A:344-439)
2b: CATH_1gbnB01 (B:38-93,B:344-439)
2c: CATH_1gbnC01 (C:38-93,C:344-439)
View:
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(
)
(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Human (Homo sapiens)
(18)
1a
1gbnA02
A:94-343
1b
1gbnB02
B:94-343
1c
1gbnC02
C:94-343
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Human (Homo sapiens)
(15)
2a
1gbnA01
A:38-93,A:344-439
2b
1gbnB01
B:38-93,B:344-439
2c
1gbnC01
C:38-93,C:344-439
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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