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1GAI
Asym. Unit
Info
Asym.Unit (146 KB)
Biol.Unit 1 (136 KB)
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(1)
Title
:
GLUCOAMYLASE-471 COMPLEXED WITH D-GLUCO-DIHYDROACARBOSE
Authors
:
A. E. Aleshin, B. Stoffer, L. M. Firsov, B. Svensson, R. B. Honzatko
Date
:
06 Mar 96 (Deposition) - 17 Aug 96 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Glycosidase, Polysaccharide Degradation, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Aleshin, B. Stoffer, L. M. Firsov, B. Svensson, R. B. Honzatko
Crystallographic Complexes Of Glucoamylase With Maltooligosaccharide Analogs: Relationship Of Stereochemica Distortions At The Nonreducing End To The Catalytic Mechanism.
Biochemistry V. 35 8319 1996
(for further references see the
PDB file header
)
[
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]
Hetero Components
(4, 25)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: DIHYDRO-ACARBOSE (GACa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
3i: ALPHA-D-MANNOSE (MANi)
3j: ALPHA-D-MANNOSE (MANj)
3k: ALPHA-D-MANNOSE (MANk)
3l: ALPHA-D-MANNOSE (MANl)
3m: ALPHA-D-MANNOSE (MANm)
3n: ALPHA-D-MANNOSE (MANn)
3o: ALPHA-D-MANNOSE (MANo)
3p: ALPHA-D-MANNOSE (MANp)
3q: ALPHA-D-MANNOSE (MANq)
3r: ALPHA-D-MANNOSE (MANr)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
GAC
1
Ligand/Ion
DIHYDRO-ACARBOSE
3
MAN
18
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: SB1 (UNKNOWN)
27: SB2 (UNKNOWN)
28: SB3 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:219 , ALA A:450 , THR A:452 , SER A:453 , MAN A:478 , HOH A:741 , HOH A:757 , HOH A:872 , HOH A:942 , HOH A:1047
BINDING SITE FOR RESIDUE MAN A 474
02
AC2
SOFTWARE
SER A:119 , TRP A:120 , TYR A:175 , SER A:455 , TYR A:458 , GAC A:498 , HOH A:601 , HOH A:618 , HOH A:627 , HOH A:669 , HOH A:729 , HOH A:931 , HOH A:1044
BINDING SITE FOR RESIDUE MAN A 475
03
AC3
SOFTWARE
ASP A:263 , GLU A:439 , THR A:440 , SER A:441 , ALA A:442 , SER A:443 , SER A:444 , HOH A:783
BINDING SITE FOR RESIDUE MAN A 476
04
AC4
SOFTWARE
SER A:444 , PRO A:446 , HOH A:586 , HOH A:783 , HOH A:906 , HOH A:959
BINDING SITE FOR RESIDUE MAN A 477
05
AC5
SOFTWARE
SER A:119 , GLU A:153 , SER A:453 , MAN A:474 , HOH A:674 , HOH A:696 , HOH A:729
BINDING SITE FOR RESIDUE MAN A 478
06
AC6
SOFTWARE
ARG A:122 , PRO A:123 , ARG A:125 , THR A:173 , GLY A:174 , ASN A:182 , THR A:457 , HOH A:564 , HOH A:621 , HOH A:702
BINDING SITE FOR RESIDUE MAN A 479
07
AC7
SOFTWARE
ARG A:160 , GLN A:172 , THR A:173 , SER A:459 , SER A:460 , HOH A:551 , HOH A:570 , HOH A:663 , HOH A:699 , HOH A:1027 , HOH A:1036
BINDING SITE FOR RESIDUE MAN A 480
08
AC8
SOFTWARE
ALA A:86 , ILE A:87 , GLY A:90 , SER A:460 , VAL A:461 , HOH A:598 , HOH A:907 , HOH A:962
BINDING SITE FOR RESIDUE MAN A 481
09
AC9
SOFTWARE
SER A:460 , THR A:462 , MAN A:483 , HOH A:699 , HOH A:842 , HOH A:907
BINDING SITE FOR RESIDUE MAN A 482
10
BC1
SOFTWARE
THR A:462 , THR A:464 , MAN A:482
BINDING SITE FOR RESIDUE MAN A 483
11
BC2
SOFTWARE
ASN A:171 , TYR A:223 , ALA A:451 , NAG A:485 , HOH A:542 , HOH A:545 , HOH A:580 , HOH A:651 , HOH A:659
BINDING SITE FOR RESIDUE NAG A 484
12
BC3
SOFTWARE
PHE A:237 , CYS A:449 , NAG A:484 , BMA A:486 , HOH A:659 , HOH A:1039
BINDING SITE FOR RESIDUE NAG A 485
13
BC4
SOFTWARE
NAG A:485 , MAN A:487 , HOH A:1007
BINDING SITE FOR RESIDUE BMA A 486
14
BC5
SOFTWARE
SER A:226 , PHE A:237 , BMA A:486 , MAN A:488
BINDING SITE FOR RESIDUE MAN A 487
15
BC6
SOFTWARE
ASN A:236 , PHE A:237 , ASP A:238 , SER A:239 , MAN A:487 , HOH A:1039
BINDING SITE FOR RESIDUE MAN A 488
16
BC7
SOFTWARE
TRP A:28 , ASN A:395 , SER A:397 , ASP A:414 , NAG A:490 , HOH A:678 , HOH A:749
BINDING SITE FOR RESIDUE NAG A 489
17
BC8
SOFTWARE
ARG A:413 , NAG A:489 , BMA A:491 , MAN A:493 , MAN A:494 , HOH A:581 , HOH A:629 , HOH A:678 , HOH A:748
BINDING SITE FOR RESIDUE NAG A 490
18
BC9
SOFTWARE
ARG A:413 , NAG A:490 , MAN A:492 , MAN A:493 , HOH A:885 , HOH A:930
BINDING SITE FOR RESIDUE BMA A 491
19
CC1
SOFTWARE
BMA A:491 , MAN A:495 , HOH A:727 , HOH A:912
BINDING SITE FOR RESIDUE MAN A 492
20
CC2
SOFTWARE
NAG A:490 , BMA A:491 , MAN A:494 , MAN A:497 , HOH A:791 , HOH A:951 , HOH A:990
BINDING SITE FOR RESIDUE MAN A 493
21
CC3
SOFTWARE
SER A:42 , ASN A:45 , GLU A:409 , SER A:411 , ARG A:413 , NAG A:490 , MAN A:493 , HOH A:738 , HOH A:857
BINDING SITE FOR RESIDUE MAN A 494
22
CC4
SOFTWARE
VAL A:29 , SER A:30 , PRO A:41 , THR A:43 , MAN A:492 , MAN A:496 , HOH A:664 , HOH A:666 , HOH A:727 , HOH A:770 , HOH A:958
BINDING SITE FOR RESIDUE MAN A 495
23
CC5
SOFTWARE
THR A:43 , MAN A:495 , HOH A:858
BINDING SITE FOR RESIDUE MAN A 496
24
CC6
SOFTWARE
MAN A:493
BINDING SITE FOR RESIDUE MAN A 497
25
CC7
SOFTWARE
TYR A:48 , TRP A:52 , ARG A:54 , ASP A:55 , SER A:119 , TRP A:120 , GLY A:121 , THR A:148 , TYR A:175 , LEU A:177 , TRP A:178 , GLU A:179 , GLU A:180 , ALA A:205 , ARG A:305 , TRP A:317 , TRP A:417 , MAN A:475 , HOH A:500 , HOH A:729 , HOH A:778 , HOH A:871 , HOH A:890 , HOH A:929 , HOH A:931 , HOH A:938 , HOH A:953 , HOH A:961 , HOH A:980 , HOH A:1044 , HOH A:1046
BINDING SITE FOR RESIDUE GAC A 498
26
SB1
UNKNOWN
ARG A:54 , ASP A:55 , LEU A:177 , GLU A:179 , ARG A:305 , GLU A:400 , HOH A:500
BINDING SUBSITE FOR 1ST RESIDUE OF D-GLUCO- DIHYDROACARBOSE
27
SB2
UNKNOWN
GLU A:180 , TRP A:178 , GLU A:179 , ARG A:305
BINDING SUBSITE FOR 2ND RESIDUE OF D-GLUCO- DIHYDROACARBOSE
28
SB3
UNKNOWN
GLU A:179 , GLY A:121
BINDING SUBSITE FOR 3RD RESIDUE OF D-GLUCO- DIHYDROACARBOSE
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GLUCOAMYLASE (A:173-183,A:173-183)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLUCOAMYLASE
PS00820
Glucoamylase active site region signature.
AMYG_ASPSH
196-206
1
A:173-183
AMYG_ASPAW
197-207
1
A:173-183
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1gaia_ (A:)
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Classes
(
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(
)
Folds
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Superfamilies
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)
(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Glucoamylase
(10)
Protein domain
:
Glucoamylase
(9)
Aspergillus awamori, variant x100 [TaxId: 105351]
(6)
1a
d1gaia_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1gaiA00 (A:1-473)
View:
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Homologous Superfamilies
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.10, no name defined]
(67)
Aspergillus awamori. Organism_taxid: 105351. Variant: x100
(2)
1a
1gaiA00
A:1-473
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
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Asymmetric Unit 1
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