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1G9X
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (45 KB)
Biol.Unit 3 (44 KB)
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(1)
Title
:
CHARACTERIZATION OF THE TWINNING STRUCTURE OF MJ1267, AN ATP-BINDING CASSETTE OF AN ABC TRANSPORTER
Authors
:
Y. -R. Yuan, J. F. Hunt
Date
:
28 Nov 00 (Deposition) - 11 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Hemihedral Twinning Structure, Atp-Binding Cassette, Abc Transporter, Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. R. Yuan, O. Martsinkevich, J. F. Hunt
Structural Characterization Of An Mj1267 Atp-Binding Cassette Crystal With A Complex Pattern Of Twinning Caused By Promiscuous Fiber Packing.
Acta Crystallogr. , Sect. D V. 59 225 2003
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: METHYL MERCURY ION (MMCa)
3b: METHYL MERCURY ION (MMCb)
3c: METHYL MERCURY ION (MMCc)
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Label:
No.
Name
Count
Type
Full Name
1
ADP
3
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
MMC
3
Ligand/Ion
METHYL MERCURY ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:47 , ADP A:300 , HOH A:3038
BINDING SITE FOR RESIDUE MG A 301
2
AC2
SOFTWARE
SER B:1047 , ASP B:1178 , GLU B:1179 , ADP B:1300 , HOH B:3030
BINDING SITE FOR RESIDUE MG B 1301
3
AC3
SOFTWARE
SER C:2047 , ADP C:2300
BINDING SITE FOR RESIDUE MG C 2301
4
AC4
SOFTWARE
THR A:4 , MET A:5 , GLU A:6 , CYS A:31
BINDING SITE FOR RESIDUE MMC A 302
5
AC5
SOFTWARE
PHE A:17 , PHE A:20 , PRO A:41 , ASN A:42 , GLY A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48 , MG A:301 , HOH A:3013 , HOH A:3034 , HOH A:3038 , ARG B:1236
BINDING SITE FOR RESIDUE ADP A 300
6
AC6
SOFTWARE
CYS B:1031 , ARG B:1236
BINDING SITE FOR RESIDUE MMC B 1302
7
AC7
SOFTWARE
ASN A:68 , PHE B:1017 , PHE B:1020 , PRO B:1041 , GLY B:1043 , SER B:1044 , GLY B:1045 , LYS B:1046 , SER B:1047 , THR B:1048 , MG B:1301 , HOH B:3030
BINDING SITE FOR RESIDUE ADP B 1300
8
AC8
SOFTWARE
THR C:2004 , CYS C:2031
BINDING SITE FOR RESIDUE MMC C 2302
9
AC9
SOFTWARE
GLY A:256 , PHE C:2017 , PRO C:2041 , GLY C:2043 , SER C:2044 , GLY C:2045 , LYS C:2046 , SER C:2047 , THR C:2048 , MG C:2301 , HOH C:3008
BINDING SITE FOR RESIDUE ADP C 2300
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ABC_TRANSPORTER_1 (A:154-168,B:1154-1168,C:2154-2168)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
LIVG_METJA
154-168
3
A:154-168
B:1154-1168
C:2154-2168
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1g9xa_ (A:)
1b: SCOP_d1g9xb_ (B:)
1c: SCOP_d1g9xc_ (C:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
MJ1267
(3)
Methanococcus jannaschii [TaxId: 2190]
(3)
1a
d1g9xa_
A:
1b
d1g9xb_
B:
1c
d1g9xc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1g9xA00 (A:4-256)
1b: CATH_1g9xB00 (B:1004-1256)
1c: CATH_1g9xC00 (C:2004-2256)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Methanocaldococcus jannaschii. Organism_taxid: 2190.
(2)
1a
1g9xA00
A:4-256
1b
1g9xB00
B:1004-1256
1c
1g9xC00
C:2004-2256
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (132 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (45 KB)
Header - Biol.Unit 2
Biol.Unit 3 (44 KB)
Header - Biol.Unit 3
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