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1G97
Biol. Unit 1
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Asym.Unit (85 KB)
Biol.Unit 1 (234 KB)
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(1)
Title
:
S.PNEUMONIAE GLMU COMPLEXED WITH UDP-N-ACETYLGLUCOSAMINE AND MG2+
Authors
:
D. Kostrewa, A. D'Arcy, M. Kamber
Date
:
22 Nov 00 (Deposition) - 22 May 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Glmu, Acetyltransferase, Uridyltransferase, Pyrophosphorylase, Left- Handed Beta-Sheet Helix, Trimer, Magnesium, Udp-N-Acetylglucosamine, Transferase
(Keyword Search:
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Reference
:
D. Kostrewa, A. D'Arcy, B. Takacs, M. Kamber
Crystal Structures Of Streptococcus Pneumoniae N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu, In Apo Form At 2. 33 A Resolution And In Complex With Udp-N-Acetylglucosamine And Mg(2+) At 1. 96 A Resolution.
J. Mol. Biol. V. 305 279 2001
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: SODIUM ION (NAa)
3a: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1a)
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No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
NA
-1
Ligand/Ion
SODIUM ION
3
UD1
3
Ligand/Ion
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:22 , ASP A:102 , ASN A:227 , UD1 A:500 , HOH A:512 , HOH A:540
BINDING SITE FOR RESIDUE MG A 460
2
AC2
SOFTWARE
ASN A:405 , HOH A:504
BINDING SITE FOR RESIDUE NA A 461
3
AC3
SOFTWARE
LEU A:8 , ALA A:10 , GLY A:11 , LYS A:22 , GLN A:72 , GLN A:75 , LEU A:76 , GLY A:77 , THR A:78 , GLY A:101 , ASP A:102 , TYR A:138 , GLY A:139 , GLU A:154 , ASN A:169 , THR A:170 , TYR A:197 , ILE A:198 , THR A:199 , GLY A:225 , ASN A:227 , MG A:460 , HOH A:512 , HOH A:513 , HOH A:540 , HOH A:544 , HOH A:560 , HOH A:562 , HOH A:630 , HOH A:752 , HOH A:824 , HOH A:864
BINDING SITE FOR RESIDUE UD1 A 500
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: HEXAPEP_TRANSFERASES (A:402-430)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXAPEP_TRANSFERASES
PS00101
Hexapeptide-repeat containing-transferases signature.
GLMU_STRPN
402-430
3
A:402-430
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1g97a1 (A:252-447)
2a: SCOP_d1g97a2 (A:2-251)
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(
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Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
GlmU C-terminal domain-like
(22)
Protein domain
:
N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
(12)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(5)
1a
d1g97a1
A:252-447
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
UDP-glucose pyrophosphorylase
(25)
Protein domain
:
N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
(12)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(5)
2a
d1g97a2
A:2-251
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1g97A01 (A:2-251)
2a: CATH_1g97A02 (A:252-440)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Streptococcus pneumoniae. Organism_taxid: 1313.
(2)
1a
1g97A01
A:2-251
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
UDP N-Acetylglucosamine Acyltransferase; domain 1
(90)
Homologous Superfamily
:
Hexapeptide repeat proteins
(85)
Streptococcus pneumoniae. Organism_taxid: 1313.
(2)
2a
1g97A02
A:252-440
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Pfam Domains
(0, 0)
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Chain A
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