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1G96
Asym. Unit
Info
Asym.Unit (26 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (146 KB)
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(1)
Title
:
HUMAN CYSTATIN C; DIMERIC FORM WITH 3D DOMAIN SWAPPING
Authors
:
R. Janowski, M. Kozak, E. Jankowska, Z. Grzonka, A. Grubb, M. Abrahamso M. Jaskolski
Date
:
22 Nov 00 (Deposition) - 06 Apr 01 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Biol. Unit 2: A (8x)
Keywords
:
Human Cystatin C Dimer, 3D Domain Swapping, Amyloid Formation, Inhibitor Of C1 And C13 Cysteine Proteases, Amyloid Angiopathy And Cerebral Hemorrhage, Hydrolase Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Janowski, M. Kozak, E. Jankowska, Z. Grzonka, A. Grubb, M. Abrahamson, M. Jaskolski
Human Cystatin C, An Amyloidogenic Protein, Dimerizes Through Three-Dimensional Domain Swapping.
Nat. Struct. Biol. V. 8 316 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:34 , ASP A:40 , SER A:44 , ARG A:70 , ARG A:93
BINDING SITE FOR RESIDUE GOL A 201
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_002207 (L68Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_002207
L
94
Q
CYTC_HUMAN
Disease (AMYL6)
28939068
A
L
68
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: CYSTATIN (A:54-67)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYSTATIN
PS00287
Cysteine proteases inhibitors signature.
CYTC_HUMAN
80-93
1
A:54-67
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Exons
(3, 3)
Info
All Exons
Exon 1.2b (A:10-55)
Exon 1.3 (A:56-93)
Exon 1.4a (A:94-120)
View:
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All Exon Boundaries
1: Boundary -/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4a
4: Boundary 1.4a/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000398411
2b
ENSE00001533104
chr20:
23618582-23618257
326
CYTC_HUMAN
1-81
81
1
A:10-55
46
1.3
ENST00000398411
3
ENSE00000660936
chr20:
23616004-23615891
114
CYTC_HUMAN
82-119
38
1
A:56-93
38
1.4a
ENST00000398411
4a
ENSE00001533102
chr20:
23614636-23614551
86
CYTC_HUMAN
120-146
27
1
A:94-120
27
1.5
ENST00000398411
5
ENSE00001533100
chr20:
23610102-23608534
1569
CYTC_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1g96a_ (A:)
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(
)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Cystatin/monellin
(68)
Family
:
Cystatins
(31)
Protein domain
:
Cystatin C
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d1g96a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1g96A00 (A:10-120)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.10, no name defined]
(37)
Human (Homo sapiens)
(13)
1a
1g96A00
A:10-120
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain A
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Asym.Unit (26 KB)
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