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1G8I
Asym. Unit
Info
Asym.Unit (76 KB)
Biol.Unit 1 (37 KB)
Biol.Unit 2 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FREQUENIN (NEURONAL CALCIUM SENSOR 1)
Authors
:
Y. Bourne, J. Dannenberg, V. Pollmann, P. Marchot, O. Pongs
Date
:
17 Nov 00 (Deposition) - 09 May 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Calcium Binding-Protein, Ef-Hand, Calcium Ion, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Bourne, J. Dannenberg, V. Pollmann, P. Marchot, O. Pongs
Immunocytochemical Localization And Crystal Structure Of Human Frequenin (Neuronal Calcium Sensor 1).
J. Biol. Chem. V. 276 11949 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 14)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
5a: HEXAETHYLENE GLYCOL (P6Ga)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
3
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CA
6
Ligand/Ion
CALCIUM ION
3
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
4
NA
2
Ligand/Ion
SODIUM ION
5
P6G
1
Ligand/Ion
HEXAETHYLENE GLYCOL
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR B:17 , THR B:20 , PHE B:22 , HOH B:568
BINDING SITE FOR RESIDUE NA B 1595
02
AC2
SOFTWARE
ALA A:175 , HOH A:501
BINDING SITE FOR RESIDUE NA A 1596
03
AC3
SOFTWARE
ASP A:73 , ASN A:75 , ASP A:77 , ARG A:79 , GLU A:84 , HOH A:733
BINDING SITE FOR RESIDUE CA A 1597
04
AC4
SOFTWARE
ASP A:109 , ASP A:111 , ASP A:113 , TYR A:115 , GLU A:120 , HOH A:507
BINDING SITE FOR RESIDUE CA A 1598
05
AC5
SOFTWARE
ASP A:157 , ASN A:159 , ASP A:161 , LYS A:163 , GLU A:168 , HOH A:565
BINDING SITE FOR RESIDUE CA A 1599
06
AC6
SOFTWARE
ASP B:73 , ASN B:75 , ASP B:77 , ARG B:79 , GLU B:84 , HOH B:696
BINDING SITE FOR RESIDUE CA B 1600
07
AC7
SOFTWARE
ASP B:109 , ASP B:111 , ASP B:113 , TYR B:115 , GLU B:120 , HOH B:583
BINDING SITE FOR RESIDUE CA B 1601
08
AC8
SOFTWARE
ASP B:157 , ASN B:159 , ASP B:161 , LYS B:163 , GLU B:168 , HOH B:701
BINDING SITE FOR RESIDUE CA B 1602
09
AC9
SOFTWARE
TYR A:108 , VAL A:125 , ARG A:148 , PHE A:169 , SER A:173 , ILE A:179 , LEU A:183 , HOH A:676 , HOH A:735 , 1PE A:952
BINDING SITE FOR RESIDUE 1PE A 951
10
BC1
SOFTWARE
THR A:92 , TRP A:103 , HOH A:676 , HOH A:710 , 1PE A:951
BINDING SITE FOR RESIDUE 1PE A 952
11
BC2
SOFTWARE
TYR B:108 , ARG B:148 , PHE B:169 , SER B:173 , ILE B:179 , LEU B:183 , HOH B:627 , HOH B:737
BINDING SITE FOR RESIDUE 1PE B 953
12
BC3
SOFTWARE
TRP A:30 , PHE A:85 , LEU A:89 , SER A:93 , ARG A:94 , ASP A:187 , HOH A:755
BINDING SITE FOR RESIDUE P6G A 954
13
BC4
SOFTWARE
GLU A:26 , TYR A:186 , HOH A:541
BINDING SITE FOR RESIDUE EDO A 901
14
BC5
SOFTWARE
PHE B:22 , TRP B:30 , SER B:93 , ASP B:187
BINDING SITE FOR RESIDUE EDO B 902
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:60-95,B:60-95|A:96-131,B:96-131|...)
2: EF_HAND_1 (A:73-85,B:73-85|A:109-121,B:109-12...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
NCS1_HUMAN
60-95
96-131
144-179
6
A:60-95
B:60-95
A:96-131
B:96-131
A:144-179
B:144-179
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
NCS1_HUMAN
73-85
109-121
157-169
6
A:73-85
B:73-85
A:109-121
B:109-121
A:157-169
B:157-169
[
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]
Exons
(7, 14)
Info
All Exons
Exon 1.1 (A:4-22 | B:3-22)
Exon 1.4 (A:22-30 | B:22-30)
Exon 1.5b (A:30-76 | B:30-76)
Exon 1.6 (A:77-103 | B:77-103)
Exon 1.7 (A:103-132 | B:103-132)
Exon 1.8 (A:138-158 | B:133-158)
Exon 1.9 (A:159-190 | B:159-188)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.4
3: Boundary 1.4/1.5b
4: Boundary 1.5b/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
7: Boundary 1.8/1.9
8: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000372398
1
ENSE00001457688
chr9:
132934857-132935006
150
NCS1_HUMAN
1-22
22
2
A:4-22
B:3-22
19
20
1.4
ENST00000372398
4
ENSE00001052774
chr9:
132963237-132963261
25
NCS1_HUMAN
22-30
9
2
A:22-30
B:22-30
9
9
1.5b
ENST00000372398
5b
ENSE00000927338
chr9:
132980111-132980249
139
NCS1_HUMAN
30-76
47
2
A:30-76
B:30-76
47
47
1.6
ENST00000372398
6
ENSE00000927339
chr9:
132982004-132982082
79
NCS1_HUMAN
77-103
27
2
A:77-103
B:77-103
27
27
1.7
ENST00000372398
7
ENSE00000927340
chr9:
132984929-132985017
89
NCS1_HUMAN
103-132
30
2
A:103-132
B:103-132
30
30
1.8
ENST00000372398
8
ENSE00000927341
chr9:
132985361-132985438
78
NCS1_HUMAN
133-158
26
2
A:138-158
B:133-158
21
26
1.9
ENST00000372398
9
ENSE00001052772
chr9:
132988668-132988783
116
NCS1_HUMAN
159-190
32
2
A:159-190
B:159-188
32
30
1.10
ENST00000372398
10
ENSE00001457687
chr9:
132995269-132999583
4315
NCS1_HUMAN
-
0
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1g8ia_ (A:)
1b: SCOP_d1g8ib_ (B:)
View:
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Classes
(
)
(
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Folds
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(
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(
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Calmodulin-like
(356)
Protein domain
:
Frequenin (neuronal calcium sensor 1)
(5)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1g8ia_
A:
1b
d1g8ib_
B:
[
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]
CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1g8iA01 (A:12-96)
1b: CATH_1g8iB02 (B:97-187)
1c: CATH_1g8iA02 (A:97-189)
1d: CATH_1g8iB01 (B:12-96)
View:
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1g8iA01
A:12-96
1b
1g8iB02
B:97-187
1c
1g8iA02
A:97-189
1d
1g8iB01
B:12-96
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Atom Selection
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Protein & NOT PROSITE
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Asymmetric Unit 1
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