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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
1G7B
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
1.3 A STRUCTURE OF T3R3 HUMAN INSULIN AT 100 K
Authors
:
G. D. Smith, W. A. Pangborn, R. H. Blessing
Date
:
09 Nov 00 (Deposition) - 03 Aug 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (3x)
Biol. Unit 2: E,F,G,H (3x)
Keywords
:
T3R3 Human Insulin Hexamer, Hormone-Growth Factor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. D. Smith, W. A. Pangborn, R. H. Blessing
Phase Changes In T(3)R(3)(F) Human Insulin: Temperature Or Pressure Induced?
Acta Crystallogr. , Sect. D V. 57 1091 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 16)
Info
All Hetero Components
1a: ACETONE (ACNa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
2f: CHLORIDE ION (CLf)
2g: CHLORIDE ION (CLg)
3a: GLYCEROL (GOLa)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACN
1
Ligand/Ion
ACETONE
2
CL
7
Ligand/Ion
CHLORIDE ION
3
GOL
1
Ligand/Ion
GLYCEROL
4
ZN
7
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS B:10 , CL B:902
BINDING SITE FOR RESIDUE ZN B 901
02
AC2
SOFTWARE
HIS D:10 , CL D:912 , HOH D:971 , HOH D:1814
BINDING SITE FOR RESIDUE ZN D 911
03
AC3
SOFTWARE
HIS D:5 , HIS D:10 , CL D:922 , CL D:923
BINDING SITE FOR RESIDUE ZN D 921
04
AC4
SOFTWARE
HIS F:10 , CL F:932 , HOH F:933
BINDING SITE FOR RESIDUE ZN F 931
05
AC5
SOFTWARE
HIS H:10 , CL H:942
BINDING SITE FOR RESIDUE ZN H 941
06
AC6
SOFTWARE
HIS B:5 , HOH B:952 , HOH B:953 , HIS H:5
BINDING SITE FOR RESIDUE ZN B 951
07
AC7
SOFTWARE
HIS B:5 , HOH B:962 , HOH B:963 , HOH B:964 , HOH B:1810 , HOH B:1811 , HOH G:1900
BINDING SITE FOR RESIDUE ZN B 961
08
AC8
SOFTWARE
HIS B:10 , ZN B:901
BINDING SITE FOR RESIDUE CL B 902
09
AC9
SOFTWARE
LEU D:6 , HIS D:10 , ZN D:911 , HOH D:1814
BINDING SITE FOR RESIDUE CL D 912
10
BC1
SOFTWARE
HIS D:5 , HIS D:10 , ZN D:921
BINDING SITE FOR RESIDUE CL D 922
11
BC2
SOFTWARE
LEU B:17 , HIS D:5 , HIS D:10 , ZN D:921
BINDING SITE FOR RESIDUE CL D 923
12
BC3
SOFTWARE
HOH D:1803 , HIS F:10 , ZN F:931 , HOH F:933
BINDING SITE FOR RESIDUE CL F 932
13
BC4
SOFTWARE
LEU H:6 , HIS H:10 , ZN H:941
BINDING SITE FOR RESIDUE CL H 942
14
BC5
SOFTWARE
GLY E:1 , ILE E:2 , VAL E:3 , GLU E:4 , LYS F:29 , THR F:30
BINDING SITE FOR RESIDUE CL E 1101
15
BC6
SOFTWARE
CYS G:11 , LEU G:16 , HOH G:1866 , HOH G:2141 , CYS H:7
BINDING SITE FOR RESIDUE GOL G 995
16
BC7
SOFTWARE
PHE F:1 , HOH F:1127 , LEU G:13 , TYR G:14
BINDING SITE FOR RESIDUE ACN G 991
[
close Site info
]
SAPs(SNPs)/Variants
(18, 72)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_063736 (G1C, chain A/C/E/G, )
02: VAR_003976 (V3L, chain A/C/E/G, )
03: VAR_063724 (H5D, chain B/D/F/H, )
04: VAR_063737 (C7S, chain A/C/E/G, )
05: VAR_063738 (C7Y, chain A/C/E/G, )
06: VAR_063725 (G8R, chain B/D/F/H, )
07: VAR_063726 (G8S, chain B/D/F/H, )
08: VAR_003971 (H10D, chain B/D/F/H, )
09: VAR_063727 (L11P, chain B/D/F/H, )
10: VAR_063739 (S12C, chain A/C/E/G, )
11: VAR_063740 (Y14C, chain A/C/E/G, )
12: VAR_063741 (Y19C, chain A/C/E/G, )
13: VAR_063728 (C19G, chain B/D/F/H, )
14: VAR_063729 (R22Q, chain B/D/F/H, )
15: VAR_063730 (G23V, chain B/D/F/H, )
16: VAR_063731 (F24C, chain B/D/F/H, )
17: VAR_003972 (F24S, chain B/D/F/H, )
18: VAR_003973 (F25L, chain B/D/F/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_063736
G
90
C
INS_HUMAN
Disease (PNDM)
80356670
A/C/E/G
G
1
C
02
UniProt
VAR_003976
V
92
L
INS_HUMAN
Unclassified
---
A/C/E/G
V
3
L
03
UniProt
VAR_063724
H
29
D
INS_HUMAN
Disease (PNDM)
121908272
B/D/F/H
H
5
D
04
UniProt
VAR_063737
C
96
S
INS_HUMAN
Disease (PNDM)
80356671
A/C/E/G
C
7
S
05
UniProt
VAR_063738
C
96
Y
INS_HUMAN
Disease (PNDM)
80356671
A/C/E/G
C
7
Y
06
UniProt
VAR_063725
G
32
R
INS_HUMAN
Disease (PNDM)
80356664
B/D/F/H
G
8
R
07
UniProt
VAR_063726
G
32
S
INS_HUMAN
Disease (PNDM)
80356664
B/D/F/H
G
8
S
08
UniProt
VAR_003971
H
34
D
INS_HUMAN
Disease (HPRI)
---
B/D/F/H
H
10
D
09
UniProt
VAR_063727
L
35
P
INS_HUMAN
Disease (PNDM)
121908273
B/D/F/H
L
11
P
10
UniProt
VAR_063739
S
101
C
INS_HUMAN
Disease (PNDM)
121908276
A/C/E/G
S
12
C
11
UniProt
VAR_063740
Y
103
C
INS_HUMAN
Disease (PNDM)
121908277
A/C/E/G
Y
14
C
12
UniProt
VAR_063741
Y
108
C
INS_HUMAN
Disease (PNDM)
80356672
A/C/E/G
Y
19
C
13
UniProt
VAR_063728
C
43
G
INS_HUMAN
Disease (PNDM)
80356666
B/D/F/H
C
19
G
14
UniProt
VAR_063729
R
46
Q
INS_HUMAN
Disease (MODY10)
121908260
B/D/F/H
R
22
Q
15
UniProt
VAR_063730
G
47
V
INS_HUMAN
Disease (PNDM)
80356667
B/D/F/H
G
23
V
16
UniProt
VAR_063731
F
48
C
INS_HUMAN
Disease (PNDM)
80356668
B/D/F/H
F
24
C
17
UniProt
VAR_003972
F
48
S
INS_HUMAN
Unclassified
---
B/D/F/H
F
24
S
18
UniProt
VAR_003973
F
49
L
INS_HUMAN
Unclassified
---
B/D/F/H
F
25
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: INSULIN (A:6-20,C:6-20,E:6-20,G:6-20)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULIN
PS00262
Insulin family signature.
INS_HUMAN
95-109
4
A:6-20
C:6-20
E:6-20
G:6-20
[
close PROSITE info
]
Exons
(2, 8)
Info
All Exons
Exon 1.1d (- | B:1-30 | - | D:1-29 | - | F:1-...)
Exon 1.2a (A:1-21 | - | C:1-21 | - | E:1-21 |...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1d
2: Boundary 1.1d/1.2a
3: Boundary 1.2a/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1d
ENST00000397262
1d
ENSE00001527959
chr11:
2182434-2182015
420
INS_HUMAN
1-63
63
4
-
B:1-30
-
D:1-29
-
F:1-30
-
H:2-29
-
30
-
29
-
30
-
28
1.2a
ENST00000397262
2a
ENSE00001488230
chr11:
2181227-2181009
219
INS_HUMAN
63-110
48
4
A:1-21
-
C:1-21
-
E:1-21
-
G:1-21
-
21
-
21
-
21
-
21
-
[
close EXON info
]
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1g7b_1 (B:,A:)
1b: SCOP_d1g7b_2 (D:,C:)
1c: SCOP_d1g7b_3 (F:,E:)
1d: SCOP_d1g7b_4 (H:,G:)
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(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Insulin-like
(117)
Superfamily
:
Insulin-like
(117)
Family
:
Insulin-like
(117)
Protein domain
:
Insulin
(92)
Human (Homo sapiens) [TaxId: 9606]
(60)
1a
d1g7b.1
B:,A:
1b
d1g7b.2
D:,C:
1c
d1g7b.3
F:,E:
1d
d1g7b.4
H:,G:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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