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1G6R
Asym. Unit
Info
Asym.Unit (272 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (135 KB)
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(1)
Title
:
A FUNCTIONAL HOT SPOT FOR ANTIGEN RECOGNITION IN A SUPERAGONIST TCR/MHC COMPLEX
Authors
:
M. Degano, K. C. Garcia, V. Apostolopoulos, M. G. Rudolph, L. Teyton, I. A. Wilson
Date
:
07 Nov 00 (Deposition) - 15 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,H,I,L,M,P,Q
Biol. Unit 1: A,B,H,L,P (1x)
Biol. Unit 2: C,D,I,M,Q (1x)
Keywords
:
T Cell Antigen Receptor, Major Histocompatibility Complex, Superagonist, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Degano, K. C. Garcia, V. Apostolopoulos, M. G. Rudolph, L. Teyton, I. A. Wilson
A Functional Hot Spot For Antigen Recognition In A Superagonist Tcr/Mhc Complex.
Immunity V. 12 251 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(6, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain L/M, )
2: VAR_B2MG_MOUSE_003 (K44E, chain L/M, )
3: VAR_B2MG_MOUSE_004 (R81T, chain L/M, )
4: VAR_B2MG_MOUSE_005 (D85D, chain L/M, )
5: VAR_B2MG_MOUSE_006 (D85V, chain L/M, )
6: VAR_TCB1_MOUSE_001 (Y190H, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
L/M
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
L/M
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
L/M
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
L/M
D
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
L/M
D
85
V
6
UniProt
VAR_TCB1_MOUSE_001
*
Y
70
H
TCB1_MOUSE
---
---
B/D
Y
190
H
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (L:78-84,M:78-84,H:257-263,I:257-26...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
2
L:78-84
M:78-84
HA1B_MOUSE
278-284
2
H:257-263
I:257-263
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(7, 14)
Info
All SCOP Domains
1a: SCOP_d1g6rl_ (L:)
1b: SCOP_d1g6rm_ (M:)
2a: SCOP_d1g6rh1 (H:182-274)
2b: SCOP_d1g6ri1 (I:182-274)
3a: SCOP_d1g6ra2 (A:118-213)
3b: SCOP_d1g6rc2 (C:118-213)
4a: SCOP_d1g6rb2 (B:118-247)
4b: SCOP_d1g6rd2 (D:118-247)
5a: SCOP_d1g6ra1 (A:1-117)
5b: SCOP_d1g6rc1 (C:1-117)
6a: SCOP_d1g6rb1 (B:1-117)
6b: SCOP_d1g6rd1 (D:1-117)
7a: SCOP_d1g6rh2 (H:1-181)
7b: SCOP_d1g6ri2 (I:1-181)
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Classes
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
1a
d1g6rl_
L:
1b
d1g6rm_
M:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Mouse (Mus musculus) [TaxId: 10090]
(102)
2a
d1g6rh1
H:182-274
2b
d1g6ri1
I:182-274
Protein domain
:
T-cell antigen receptor
(81)
Mouse (Mus musculus), alpha-chain [TaxId: 10090]
(11)
3a
d1g6ra2
A:118-213
3b
d1g6rc2
C:118-213
Mouse (Mus musculus), beta-chain [TaxId: 10090]
(15)
4a
d1g6rb2
B:118-247
4b
d1g6rd2
D:118-247
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
T-cell antigen receptor
(105)
Mouse (Mus musculus), alpha-chain [TaxId: 10090]
(21)
5a
d1g6ra1
A:1-117
5b
d1g6rc1
C:1-117
Mouse (Mus musculus), beta-chain [TaxId: 10090]
(28)
6a
d1g6rb1
B:1-117
6b
d1g6rd1
D:1-117
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Mouse (Mus musculus), H-2KB [TaxId: 10090]
(42)
7a
d1g6rh2
H:1-181
7b
d1g6ri2
I:1-181
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CATH Domains
(2, 14)
Info
all CATH domains
1a: CATH_1g6rH01 (H:1-181)
1b: CATH_1g6rI01 (I:1-181)
2a: CATH_1g6rL00 (L:1-99)
2b: CATH_1g6rH02 (H:182-274)
2c: CATH_1g6rI02 (I:182-274)
2d: CATH_1g6rM00 (M:1-99)
2e: CATH_1g6rB01 (B:3-117)
2f: CATH_1g6rD01 (D:3-117)
2g: CATH_1g6rA02 (A:117-213)
2h: CATH_1g6rC02 (C:117-213)
2i: CATH_1g6rB02 (B:118-246)
2j: CATH_1g6rD02 (D:118-246)
2k: CATH_1g6rA01 (A:1-116)
2l: CATH_1g6rC01 (C:1-116)
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
House mouse (Mus musculus)
(92)
1a
1g6rH01
H:1-181
1b
1g6rI01
I:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1g6rL00
L:1-99
2b
1g6rH02
H:182-274
2c
1g6rI02
I:182-274
2d
1g6rM00
M:1-99
2e
1g6rB01
B:3-117
2f
1g6rD01
D:3-117
2g
1g6rA02
A:117-213
2h
1g6rC02
C:117-213
2i
1g6rB02
B:118-246
2j
1g6rD02
D:118-246
2k
1g6rA01
A:1-116
2l
1g6rC01
C:1-116
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Pfam Domains
(0, 0)
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Asym.Unit (272 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
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