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1G6O
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (330 KB)
Biol.Unit 2 (658 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI ATPASE, HP0525, IN COMPLEX WITH ADP
Authors
:
H. J. Yeo, S. N. Savvides, A. B. Herr, E. Lanka, G. Waksman, Midwest Cent Structural Genomics (Mcsg)
Date
:
07 Nov 00 (Deposition) - 24 Jan 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Biol. Unit 2: A,B (6x)
Keywords
:
Atpase, Type Iv Secretion System, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. J. Yeo, S. N. Savvides, A. B. Herr, E. Lanka, G. Waksman
Crystal Structure Of The Hexameric Traffic Atpase Of The Helicobacter Pylori Type Iv Secretion System.
Mol. Cell V. 6 1461 2000
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Hetero Components
(3, 19)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
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Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MSE
12
Mod. Amino Acid
SELENOMETHIONINE
3
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:61 , ARG A:133 , PHE A:145 , GLY A:181 , GLY A:183 , LYS A:184 , THR A:185 , THR A:186 , LYS A:320
BINDING SITE FOR RESIDUE ADP A 401
2
AC2
SOFTWARE
ASN B:61 , ARG B:133 , SER B:136 , PHE B:145 , GLY B:181 , SER B:182 , GLY B:183 , LYS B:184 , THR B:185 , THR B:186 , LYS B:320 , HOH B:1011 , HOH B:1286
BINDING SITE FOR RESIDUE ADP B 402
3
AC3
SOFTWARE
GLU A:43 , PRO B:67 , ASP B:69 , PEG B:501
BINDING SITE FOR RESIDUE PEG B 500
4
AC4
SOFTWARE
ASP A:38 , PHE B:68 , ASP B:69 , ARG B:73 , PEG B:500 , PEG B:502
BINDING SITE FOR RESIDUE PEG B 501
5
AC5
SOFTWARE
ASP A:69 , ASP B:38 , PEG B:501 , PEG B:503
BINDING SITE FOR RESIDUE PEG B 502
6
AC6
SOFTWARE
PRO A:67 , PHE A:68 , ASP A:69 , PEG B:502 , PEG B:504 , HOH B:1128
BINDING SITE FOR RESIDUE PEG B 503
7
AC7
SOFTWARE
PEG B:503
BINDING SITE FOR RESIDUE PEG B 504
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1g6oa_ (A:)
1b: SCOP_d1g6ob_ (B:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
Hexameric traffic ATPase, HP0525
(5)
Helicobacter pylori [TaxId: 210]
(5)
1a
d1g6oa_
A:
1b
d1g6ob_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1g6oA01 (A:25-135)
1b: CATH_1g6oB01 (B:25-135)
2a: CATH_1g6oA02 (A:136-322)
2b: CATH_1g6oB02 (B:136-322)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
[code=3.30.450.90, no name defined]
(7)
Helicobacter pylori. Organism_taxid: 210.
(1)
1a
1g6oA01
A:25-135
1b
1g6oB01
B:25-135
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Helicobacter pylori. Organism_taxid: 210.
(1)
2a
1g6oA02
A:136-322
2b
1g6oB02
B:136-322
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Pfam Domains
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Asym.Unit (119 KB)
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