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1G63
Asym. Unit
Info
Asym.Unit (345 KB)
Biol.Unit 1 (337 KB)
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(1)
Title
:
PEPTIDYL-CYSTEINE DECARBOXYLASE EPID
Authors
:
M. Blaesse, T. Kupke, R. Huber, S. Steinbac
Date
:
03 Nov 00 (Deposition) - 03 May 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Alpha, Beta Protein, Rossmann Like Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Blaesse, T. Kupke, R. Huber, S. Steinbacher
Crystal Structure Of The Peptidyl-Cysteine Decarboxylase Epid Complexed With A Pentapeptide Substrate.
Embo J. V. 19 6299 2000
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: FLAVIN MONONUCLEOTIDE (FMNa)
1b: FLAVIN MONONUCLEOTIDE (FMNb)
1c: FLAVIN MONONUCLEOTIDE (FMNc)
1d: FLAVIN MONONUCLEOTIDE (FMNd)
1e: FLAVIN MONONUCLEOTIDE (FMNe)
1f: FLAVIN MONONUCLEOTIDE (FMNf)
1g: FLAVIN MONONUCLEOTIDE (FMNg)
1h: FLAVIN MONONUCLEOTIDE (FMNh)
1i: FLAVIN MONONUCLEOTIDE (FMNi)
1j: FLAVIN MONONUCLEOTIDE (FMNj)
1k: FLAVIN MONONUCLEOTIDE (FMNk)
1l: FLAVIN MONONUCLEOTIDE (FMNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FMN
12
Ligand/Ion
FLAVIN MONONUCLEOTIDE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:10 , ALA A:11 , SER A:12 , ILE A:13 , SER A:37 , PHE A:43 , SER A:83 , ALA A:84 , ASN A:85 , THR A:86 , ASN A:115 , MET A:116 , HOH A:501 , HOH A:503 , HOH A:506 , HOH A:514 , HOH A:517 , HOH A:542 , PRO B:63 , LEU B:64 , LEU B:65 , HIS B:67 , CYS B:95 , ASP B:96 , THR B:101
BINDING SITE FOR RESIDUE FMN A 500
02
AC2
SOFTWARE
THR B:10 , ALA B:11 , SER B:12 , ILE B:13 , SER B:37 , PHE B:43 , SER B:83 , ALA B:84 , ASN B:85 , THR B:86 , ASN B:115 , MET B:116 , HOH B:503 , HOH B:504 , HOH B:515 , HOH B:518 , HOH B:521 , HOH B:532 , HOH B:535 , PRO H:63 , LEU H:64 , LEU H:65 , HIS H:67 , CYS H:95 , ASP H:96 , THR H:101 , LEU K:51
BINDING SITE FOR RESIDUE FMN B 501
03
AC3
SOFTWARE
THR C:10 , ALA C:11 , SER C:12 , ILE C:13 , SER C:37 , PHE C:43 , SER C:83 , ALA C:84 , ASN C:85 , THR C:86 , ASN C:115 , MET C:116 , HOH C:503 , HOH C:504 , HOH C:510 , HOH C:520 , HOH C:521 , LEU H:51 , PRO J:63 , LEU J:64 , LEU J:65 , HIS J:67 , CYS J:95 , ASP J:96 , THR J:101
BINDING SITE FOR RESIDUE FMN C 502
04
AC4
SOFTWARE
THR D:10 , ALA D:11 , SER D:12 , ILE D:13 , SER D:37 , PHE D:43 , SER D:83 , ALA D:84 , ASN D:85 , THR D:86 , ASN D:115 , MET D:116 , HOH D:504 , HOH D:505 , HOH D:513 , HOH D:515 , LEU E:51 , PRO F:63 , LEU F:64 , LEU F:65 , HIS F:67 , CYS F:95 , ASP F:96 , THR F:101 , HOH F:530
BINDING SITE FOR RESIDUE FMN D 503
05
AC5
SOFTWARE
PRO C:63 , LEU C:64 , LEU C:65 , HIS C:67 , CYS C:95 , ASP C:96 , THR C:101 , THR E:10 , ALA E:11 , SER E:12 , ILE E:13 , SER E:37 , PHE E:43 , SER E:83 , ALA E:84 , ASN E:85 , THR E:86 , ASN E:115 , MET E:116 , HOH E:506 , HOH E:507 , HOH E:508 , HOH E:516 , HOH E:519 , HOH E:522
BINDING SITE FOR RESIDUE FMN E 504
06
AC6
SOFTWARE
THR F:10 , ALA F:11 , SER F:12 , ILE F:13 , SER F:37 , PHE F:43 , SER F:83 , ALA F:84 , ASN F:85 , THR F:86 , ASN F:115 , MET F:116 , HOH F:508 , HOH F:510 , HOH F:514 , HOH F:518 , PRO G:63 , LEU G:64 , LEU G:65 , HIS G:67 , CYS G:95 , ASP G:96 , THR G:101 , HOH G:526
BINDING SITE FOR RESIDUE FMN F 505
07
AC7
SOFTWARE
PRO D:63 , LEU D:64 , LEU D:65 , CYS D:95 , ASP D:96 , THR D:101 , HOH D:517 , THR G:10 , ALA G:11 , SER G:12 , ILE G:13 , SER G:37 , PHE G:43 , SER G:83 , ALA G:84 , ASN G:85 , THR G:86 , ASN G:115 , MET G:116 , HOH G:509 , HOH G:510 , HOH G:511 , HOH G:513 , HOH G:514
BINDING SITE FOR RESIDUE FMN G 506
08
AC8
SOFTWARE
PRO A:63 , LEU A:64 , LEU A:65 , HIS A:67 , CYS A:95 , ASP A:96 , THR A:101 , LEU C:51 , THR H:10 , ALA H:11 , SER H:12 , ILE H:13 , SER H:37 , PHE H:43 , SER H:83 , ALA H:84 , ASN H:85 , THR H:86 , ASN H:115 , MET H:116 , HOH H:508 , HOH H:515 , HOH H:517 , HOH H:520 , HOH H:528
BINDING SITE FOR RESIDUE FMN H 507
09
AC9
SOFTWARE
LEU F:51 , THR I:10 , ALA I:11 , SER I:12 , ILE I:13 , SER I:37 , PHE I:43 , SER I:83 , ALA I:84 , ASN I:85 , THR I:86 , ASN I:115 , MET I:116 , HOH I:511 , HOH I:514 , HOH I:516 , HOH I:517 , HOH I:518 , HOH I:521 , HOH I:522 , HOH I:529 , PRO L:63 , LEU L:64 , LEU L:65 , HIS L:67 , CYS L:95 , ASP L:96 , THR L:101
BINDING SITE FOR RESIDUE FMN I 508
10
BC1
SOFTWARE
PRO E:63 , LEU E:64 , LEU E:65 , HIS E:67 , CYS E:95 , ASP E:96 , THR E:101 , HOH E:523 , THR J:10 , ALA J:11 , SER J:12 , ILE J:13 , SER J:37 , PHE J:43 , SER J:83 , ALA J:84 , ASN J:85 , THR J:86 , ASN J:115 , MET J:116 , MET J:120 , HOH J:510 , HOH J:512 , HOH J:517 , HOH J:524 , HOH J:525 , HOH J:533 , HOH J:536 , LEU L:51
BINDING SITE FOR RESIDUE FMN J 509
11
BC2
SOFTWARE
LEU B:51 , PRO I:63 , LEU I:64 , LEU I:65 , HIS I:67 , CYS I:95 , ASP I:96 , THR I:101 , THR K:10 , ALA K:11 , SER K:12 , ILE K:13 , SER K:37 , PHE K:43 , SER K:83 , ALA K:84 , ASN K:85 , THR K:86 , ASN K:115 , MET K:116 , MET K:120 , HOH K:512 , HOH K:519 , HOH K:520 , HOH K:527 , HOH K:532
BINDING SITE FOR RESIDUE FMN K 510
12
BC3
SOFTWARE
LEU J:51 , PRO K:63 , LEU K:64 , LEU K:65 , HIS K:67 , CYS K:95 , ASP K:96 , THR K:101 , THR L:10 , ALA L:11 , SER L:12 , ILE L:13 , SER L:37 , PHE L:43 , SER L:83 , ALA L:84 , ASN L:85 , THR L:86 , ASN L:115 , MET L:116 , HOH L:513 , HOH L:515 , HOH L:516 , HOH L:520 , HOH L:522 , HOH L:561
BINDING SITE FOR RESIDUE FMN L 511
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1g63a_ (A:)
1b: SCOP_d1g63b_ (B:)
1c: SCOP_d1g63k_ (K:)
1d: SCOP_d1g63l_ (L:)
1e: SCOP_d1g63c_ (C:)
1f: SCOP_d1g63d_ (D:)
1g: SCOP_d1g63e_ (E:)
1h: SCOP_d1g63f_ (F:)
1i: SCOP_d1g63g_ (G:)
1j: SCOP_d1g63h_ (H:)
1k: SCOP_d1g63i_ (I:)
1l: SCOP_d1g63j_ (J:)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
(11)
Superfamily
:
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
(11)
Family
:
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
(8)
Protein domain
:
Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD
(2)
Staphylococcus epidermidis [TaxId: 1282]
(2)
1a
d1g63a_
A:
1b
d1g63b_
B:
1c
d1g63k_
K:
1d
d1g63l_
L:
1e
d1g63c_
C:
1f
d1g63d_
D:
1g
d1g63e_
E:
1h
d1g63f_
F:
1i
d1g63g_
G:
1j
d1g63h_
H:
1k
d1g63i_
I:
1l
d1g63j_
J:
[
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]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1g63A00 (A:1-174)
1b: CATH_1g63G00 (G:1-174)
1c: CATH_1g63D00 (D:1-174)
1d: CATH_1g63F00 (F:1-174)
1e: CATH_1g63H00 (H:1-174)
1f: CATH_1g63I00 (I:1-174)
1g: CATH_1g63J00 (J:1-174)
1h: CATH_1g63L00 (L:1-174)
1i: CATH_1g63C00 (C:1-174)
1j: CATH_1g63E00 (E:1-174)
1k: CATH_1g63K00 (K:1-174)
1l: CATH_1g63B00 (B:1-174)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1950, no name defined]
(9)
Staphylococcus epidermidis. Organism_taxid: 1282. Strain: tue3298.
(2)
1a
1g63A00
A:1-174
1b
1g63G00
G:1-174
1c
1g63D00
D:1-174
1d
1g63F00
F:1-174
1e
1g63H00
H:1-174
1f
1g63I00
I:1-174
1g
1g63J00
J:1-174
1h
1g63L00
L:1-174
1i
1g63C00
C:1-174
1j
1g63E00
E:1-174
1k
1g63K00
K:1-174
1l
1g63B00
B:1-174
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Pfam Domains
(0, 0)
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Chain L
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