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1G5N
Asym. Unit
Info
Asym.Unit (68 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
ANNEXIN V COMPLEX WITH HEPARIN OLIGOSACCHARIDES
Authors
:
I. Capila, M. J. Heraiz, Y. D. Mo, T. R. Mealy, B. Campos, J. R. Dedman, R. J. Linhardt, B. A. Seaton
Date
:
01 Nov 00 (Deposition) - 06 Jun 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Helix-Bundle, Membrane Binding, Heparin, Heparan Sulfate, Blood Clotting
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Capila, M. J. Hernaiz, Y. D. Mo, T. R. Mealy, B. Campos, J. R. Dedman, R. J. Linhardt, B. A. Seaton
Annexin V--Heparin Oligosaccharide Complex Suggests Heparan Sulfate--Mediated Assembly On Cell Surfaces.
Structure V. 9 57 2001
[
close entry info
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
2a: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSa)
2b: 2-O-SULFO-ALPHA-L-IDOPYRANURONIC A... (IDSb)
3a: N,O6-DISULFO-GLUCOSAMINE (SGNa)
3b: N,O6-DISULFO-GLUCOSAMINE (SGNb)
3c: N,O6-DISULFO-GLUCOSAMINE (SGNc)
3d: N,O6-DISULFO-GLUCOSAMINE (SGNd)
4a: 1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLU... (UAPa)
4b: 1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLU... (UAPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
9
Ligand/Ion
CALCIUM ION
2
IDS
2
Ligand/Ion
2-O-SULFO-ALPHA-L-IDOPYRANURONIC ACID
3
SGN
4
Ligand/Ion
N,O6-DISULFO-GLUCOSAMINE
4
UAP
2
Ligand/Ion
1,4-DIDEOXY-5-DEHYDRO-O2-SULFO-GLUCURONIC ACID
[
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]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:28 , LEU A:29 , HOH A:497 , HOH A:537 , HOH A:613 , HOH A:699 , HOH A:734 , SGN A:802
BINDING SITE FOR RESIDUE UAP A 801
02
AC2
SOFTWARE
ARG A:23 , LYS A:27 , GLY A:28 , ARG A:61 , ARG A:149 , HOH A:501 , HOH A:518 , HOH A:596 , HOH A:648 , HOH A:699 , UAP A:801 , IDS A:803
BINDING SITE FOR RESIDUE SGN A 802
03
AC3
SOFTWARE
HOH A:521 , HOH A:699 , HOH A:733 , SGN A:802 , SGN A:804
BINDING SITE FOR RESIDUE IDS A 803
04
AC4
SOFTWARE
LYS A:68 , SER A:69 , IDS A:803
BINDING SITE FOR RESIDUE SGN A 804
05
AC5
SOFTWARE
ALA A:2 , LEU A:3 , LYS A:106 , HOH A:659 , SGN A:902
BINDING SITE FOR RESIDUE UAP A 901
06
AC6
SOFTWARE
ALA A:2 , LEU A:3 , HOH A:486 , HOH A:672 , UAP A:901 , IDS A:903
BINDING SITE FOR RESIDUE SGN A 902
07
AC7
SOFTWARE
SER A:202 , ARG A:205 , ARG A:206 , HOH A:463 , HOH A:473 , HOH A:619 , HOH A:645 , HOH A:672 , HOH A:674 , SGN A:902 , SGN A:904
BINDING SITE FOR RESIDUE IDS A 903
08
AC8
SOFTWARE
ASP A:162 , THR A:163 , ALA A:164 , SER A:202 , ARG A:206 , SER A:228 , GLY A:229 , ASN A:230 , HOH A:463 , HOH A:466 , HOH A:513 , HOH A:543 , HOH A:559 , HOH A:602 , IDS A:903
BINDING SITE FOR RESIDUE SGN A 904
09
AC9
SOFTWARE
MET A:26 , GLY A:28 , GLY A:30 , GLU A:70 , HOH A:537 , HOH A:562
BINDING SITE FOR RESIDUE CA A 401
10
BC1
SOFTWARE
LYS A:68 , LEU A:71 , GLU A:76 , HOH A:490 , HOH A:527 , HOH A:579
BINDING SITE FOR RESIDUE CA A 402
11
BC2
SOFTWARE
THR A:31 , GLU A:33 , HOH A:623 , HOH A:677
BINDING SITE FOR RESIDUE CA A 403
12
BC3
SOFTWARE
LEU A:98 , GLY A:100 , ALA A:101 , GLY A:102 , THR A:103 , ASP A:142 , HOH A:730
BINDING SITE FOR RESIDUE CA A 404
13
BC4
SOFTWARE
THR A:103 , GLU A:105 , HOH A:485 , HOH A:569 , HOH A:645 , HOH A:732
BINDING SITE FOR RESIDUE CA A 406
14
BC5
SOFTWARE
GLY A:181 , LYS A:184 , GLY A:186 , GLU A:226 , HOH A:671
BINDING SITE FOR RESIDUE CA A 407
15
BC6
SOFTWARE
ASP A:224 , THR A:227 , GLU A:232 , HOH A:444 , HOH A:525 , HOH A:573
BINDING SITE FOR RESIDUE CA A 408
16
BC7
SOFTWARE
THR A:187 , GLU A:189 , HOH A:455
BINDING SITE FOR RESIDUE CA A 409
17
BC8
SOFTWARE
MET A:257 , GLY A:259 , GLY A:261 , ASP A:301
BINDING SITE FOR RESIDUE CA A 410
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ANNEXIN (A:30-82|A:102-154|A:186-238|A:261-...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANNEXIN
PS00223
Annexins repeated domain signature.
ANXA5_RAT
30-82
102-154
186-238
261-313
4
A:30-82
A:102-154
A:186-238
A:261-313
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1g5na_ (A:)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Annexin
(61)
Superfamily
:
Annexin
(61)
Family
:
Annexin
(56)
Protein domain
:
Annexin V
(31)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(18)
1a
d1g5na_
A:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1g5nA02 (A:85-158)
1b: CATH_1g5nA01 (A:12-84)
1c: CATH_1g5nA04 (A:245-316)
1d: CATH_1g5nA03 (A:159-244)
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Annexin V; domain 1
(80)
Homologous Superfamily
:
[code=1.10.220.10, no name defined]
(58)
Norway rat (Rattus norvegicus)
(18)
1a
1g5nA02
A:85-158
1b
1g5nA01
A:12-84
1c
1g5nA04
A:245-316
1d
1g5nA03
A:159-244
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
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Asym.Unit (68 KB)
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