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1G4K
Biol. Unit 2
Info
Asym.Unit (95 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (33 KB)
Biol.Unit 3 (31 KB)
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(1)
Title
:
X-RAY STRUCTURE OF A NOVEL MATRIX METALLOPROTEINASE INHIBITOR COMPLEXED TO STROMELYSIN
Authors
:
P. Dunten, U. Kammlott, R. Crowther, W. Levin, L. H. Foley, P. Wang, R. Pa
Date
:
27 Oct 00 (Deposition) - 25 Apr 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Stomelysin, Mmp, Zinc Ligand, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Dunten, U. Kammlott, R. Crowther, W. Levin, L. H. Foley, P. Wang, R. Palermo
X-Ray Structure Of A Novel Matrix Metalloproteinase Inhibitor Complexed To Stromelysin.
Protein Sci. V. 10 923 2001
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
2a: GLYCEROL (GOLa)
3a: 5-METHYL-5-(4-PHENOXY-PHENYL)-PYRI... (HQQa)
3b: 5-METHYL-5-(4-PHENOXY-PHENYL)-PYRI... (HQQb)
3c: 5-METHYL-5-(4-PHENOXY-PHENYL)-PYRI... (HQQc)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
HQQ
1
Ligand/Ion
5-METHYL-5-(4-PHENOXY-PHENYL)-PYRIMIDINE-2,4,6-TRIONE
4
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(12, 12)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: AC8 (SOFTWARE)
04: AC9 (SOFTWARE)
05: AD1 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC7 (SOFTWARE)
08: CB1 (AUTHOR)
09: CB2 (AUTHOR)
10: CB3 (AUTHOR)
11: ZB1 (AUTHOR)
12: ZB2 (AUTHOR)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
HIS B:201 , HIS B:205 , HIS B:211 , HQQ B:306
BINDING SITE FOR RESIDUE ZN B 301
02
AC7
SOFTWARE
HIS B:151 , ASP B:153 , HIS B:166 , HIS B:179
BINDING SITE FOR RESIDUE ZN B 302
03
AC8
SOFTWARE
ASP B:158 , GLY B:159 , GLY B:161 , VAL B:163 , ASP B:181 , GLU B:184
BINDING SITE FOR RESIDUE CA B 303
04
AC9
SOFTWARE
ASP B:141 , GLY B:173 , ASN B:175 , ASP B:177 , HOH B:314 , HOH B:336
BINDING SITE FOR RESIDUE CA B 304
05
AD1
SOFTWARE
GLU B:216 , LEU B:218 , HIS B:224 , PHE B:232 , ARG B:233 , LEU B:234 , HOH B:342
BINDING SITE FOR RESIDUE GOL B 307
06
BC1
SOFTWARE
ASP B:107 , ASP B:182 , GLU B:184
BINDING SITE FOR RESIDUE CA B 305
07
BC7
SOFTWARE
ASN A:240 , VAL B:163 , LEU B:164 , ALA B:165 , HIS B:201 , GLU B:202 , HIS B:205 , HIS B:211 , LEU B:218 , TYR B:220 , PRO B:221 , LEU B:222 , TYR B:223 , HIS B:224 , ZN B:301 , HOH B:311
BINDING SITE FOR RESIDUE HQQ B 306
08
CB1
AUTHOR
ASP B:158 , GLY B:159 , GLY B:161 , VAL B:163 , ASP B:181 , GLU B:184
CA1 ARE THE LIGANDS OF THE CALCIUM ION CA B 303
09
CB2
AUTHOR
ASP B:141 , GLY B:173 , ASN B:175 , ASP B:177 , HOH B:314 , HOH B:336
CA2 ARE THE LIGANDS OF THE CALCIUM ION CA B 304
10
CB3
AUTHOR
ASP B:107 , ASP B:182 , GLU B:184
CA2 ARE THE LIGANDS OF THE CALCIUM ION CA B 305
11
ZB1
AUTHOR
HQQ B:306 , HIS B:201 , HIS B:205 , HIS B:211
ZN1 ARE THE LIGANDS OF THE CATALYTIC (ZN B 301) ZINC ION.
12
ZB2
AUTHOR
HIS B:151 , ASP B:153 , HIS B:166 , HIS B:179
ZN2 ARE THE LIGANDS OF THE STRUCTURAL (ZN B 302) ZINC ION.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (B:198-207)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP3_HUMAN
215-224
1
-
B:198-207
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1g4ka_ (A:)
1b: SCOP_d1g4kb_ (B:)
1c: SCOP_d1g4kc_ (C:)
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Classes
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)
(
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(
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Stromelysin-1 (MMP-3)
(40)
Human (Homo sapiens), fibroblast [TaxId: 9606]
(40)
1a
d1g4ka_
A:
1b
d1g4kb_
B:
1c
d1g4kc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1g4kA00 (A:83-250)
1b: CATH_1g4kB00 (B:83-250)
1c: CATH_1g4kC00 (C:83-250)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1g4kA00
A:83-250
1b
1g4kB00
B:83-250
1c
1g4kC00
C:83-250
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (95 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (33 KB)
Header - Biol.Unit 2
Biol.Unit 3 (31 KB)
Header - Biol.Unit 3
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