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1G3M
Asym. Unit
Info
Asym.Unit (116 KB)
Biol.Unit 1 (111 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ESTROGEN SULFOTRANSFERASE IN COMPLEX WITH IN-ACTIVE COFACTOR PAP AND 3,5,3',5'-TETRACHLORO-BIPHENYL-4,4'-DIOL
Authors
:
S. Shevtsov, E. V. Petrochenko, M. Negishi, L. C. Pedersen
Date
:
24 Oct 00 (Deposition) - 22 Jul 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Estrogen, Sulfotransferase, Pcb, Human
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Shevtsov, E. V. Petrotchenko, L. C. Pedersen, M. Negishi
Crystallographic Analysis Of A Hydroxylated Polychlorinated Biphenyl (Oh-Pcb) Bound To The Catalytic Estrogen Binding Site Of Human Estrogen Sulfotransferase.
Environ. Health Perspect. V. 111 884 2003
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pa)
1b: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
3a: 3,5,3',5'-TETRACHLORO-BIPHENYL-4,4... (PCQa)
3b: 3,5,3',5'-TETRACHLORO-BIPHENYL-4,4... (PCQb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
A3P
2
Ligand/Ion
ADENOSINE-3'-5'-DIPHOSPHATE
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
PCQ
2
Ligand/Ion
3,5,3',5'-TETRACHLORO-BIPHENYL-4,4'-DIOL
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:47 , SER A:48 , GLY A:49 , THR A:50 , THR A:51 , TRP A:52 , ARG A:129 , SER A:137 , TYR A:192 , THR A:226 , SER A:227 , PHE A:228 , MET A:231 , PHE A:254 , MET A:255 , ARG A:256 , LYS A:257 , GLY A:258 , HOH A:811 , HOH A:815 , HOH A:827 , HOH A:835 , HOH A:868 , HOH A:899
BINDING SITE FOR RESIDUE A3P A 701
2
AC2
SOFTWARE
LYS B:47 , SER B:48 , GLY B:49 , THR B:50 , THR B:51 , TRP B:52 , ARG B:129 , SER B:137 , TYR B:192 , THR B:226 , SER B:227 , PHE B:228 , MET B:231 , PHE B:254 , MET B:255 , ARG B:256 , LYS B:257 , GLY B:258 , HOH B:720 , HOH B:726 , HOH B:728 , HOH B:733 , HOH B:761 , HOH B:792
BINDING SITE FOR RESIDUE A3P B 702
3
AC3
SOFTWARE
TYR B:20 , PHE B:80 , LYS B:105 , HIS B:107 , PHE B:141 , VAL B:145 , ALA B:146 , TYR B:239 , ILE B:246 , HOH B:733 , HOH B:996
BINDING SITE FOR RESIDUE PCQ B 711
4
AC4
SOFTWARE
TYR A:20 , PHE A:80 , LYS A:105 , HIS A:107 , PHE A:141 , VAL A:145 , ALA A:146 , ILE A:246 , HOH A:827 , HOH A:1120
BINDING SITE FOR RESIDUE PCQ A 712
5
AC5
SOFTWARE
LYS A:25 , GLN B:163
BINDING SITE FOR RESIDUE EDO A 801
6
AC6
SOFTWARE
TYR A:8 , LEU A:18 , HOH A:891 , HOH A:976 , HOH A:1060 , GLU B:111 , SER B:177 , HOH B:798
BINDING SITE FOR RESIDUE EDO A 802
7
AC7
SOFTWARE
SER A:177 , HOH A:896
BINDING SITE FOR RESIDUE EDO A 803
8
AC8
SOFTWARE
ASN A:233 , HOH A:885
BINDING SITE FOR RESIDUE EDO A 804
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018907 (D22Y, chain A/B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018907
D
22
Y
ST1E1_HUMAN
Polymorphism
11569705
A/B
D
22
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(7, 14)
Info
All Exons
Exon 1.2 (A:3-49 | B:3-49)
Exon 1.3 (A:49-91 | B:49-91 (gaps))
Exon 1.4 (A:91-123 | B:91-123)
Exon 1.5a (A:124-166 | B:124-166)
Exon 1.6a (A:166-197 | B:166-197)
Exon 1.7 (A:198-258 | B:198-258)
Exon 1.8b (A:258-292 | B:258-292)
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All Exon Boundaries
1: Boundary 1.1a/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5a
5: Boundary 1.5a/1.6a
6: Boundary 1.6a/1.7
7: Boundary 1.7/1.8b
8: Boundary 1.8b/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000226444
1a
ENSE00001024505
chr4:
70725870-70725767
104
ST1E1_HUMAN
-
0
0
-
-
1.2
ENST00000226444
2
ENSE00002201157
chr4:
70723371-70723218
154
ST1E1_HUMAN
1-49
49
2
A:3-49
B:3-49
47
47
1.3
ENST00000226444
3
ENSE00000720189
chr4:
70721144-70721019
126
ST1E1_HUMAN
49-91
43
2
A:49-91
B:49-91 (gaps)
43
43
1.4
ENST00000226444
4
ENSE00000720186
chr4:
70720032-70719935
98
ST1E1_HUMAN
91-123
33
2
A:91-123
B:91-123
33
33
1.5a
ENST00000226444
5a
ENSE00000720182
chr4:
70715281-70715155
127
ST1E1_HUMAN
124-166
43
2
A:124-166
B:124-166
43
43
1.6a
ENST00000226444
6a
ENSE00000720178
chr4:
70713510-70713416
95
ST1E1_HUMAN
166-197
32
2
A:166-197
B:166-197
32
32
1.7
ENST00000226444
7
ENSE00000720173
chr4:
70710059-70709879
181
ST1E1_HUMAN
198-258
61
2
A:198-258
B:198-258
61
61
1.8b
ENST00000226444
8b
ENSE00001180361
chr4:
70707824-70706930
895
ST1E1_HUMAN
258-294
37
2
A:258-292
B:258-292
35
35
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1g3ma_ (A:)
1b: SCOP_d1g3mb_ (B:)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
PAPS sulfotransferase
(54)
Protein domain
:
Estrogen sulfotransferase (STE, sult1e1)
(8)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1g3ma_
A:
1b
d1g3mb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1g3mB00 (B:3-292)
1b: CATH_1g3mA00 (A:3-292)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1g3mB00
B:3-292
1b
1g3mA00
A:3-292
[
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Pfam Domains
(0, 0)
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all PFAM domains
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