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1G2E
Asym. Unit
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Asym.Unit (38 KB)
Biol.Unit 1 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUD AND AU-RICH ELEMENT OF THE TUMOR NECROSIS FACTOR ALPHA RNA
Authors
:
X. Wang, T. M. T. Hall
Date
:
18 Oct 00 (Deposition) - 05 Feb 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Rna Complex, Hud, Au-Rich Element, Tumor Necrosis Factor, Transcription/Rna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Wang, T. M. Tanaka Hall
Structural Basis For Recognition Of Au-Rich Element Rna By The Hud Protein.
Nat. Struct. Biol. V. 8 141 2001
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_058091 (D159G, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_058091
D
166
G
ELAV4_HUMAN
Polymorphism
17853533
A
D
159
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RRM (A:39-117|A:125-203|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
ELAV4_HUMAN
46-124
132-212
297-375
2
A:39-117
A:125-203
-
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Exons
(4, 4)
Info
All Exons
Exon 1.10d (A:37-77)
Exon 1.11a (A:77-111)
Exon 1.13 (A:112-163)
Exon 1.14 (A:163-203)
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All Exon Boundaries
1: Boundary 1.4b/1.10d
2: Boundary 1.10d/1.11a
3: Boundary 1.11a/1.13
4: Boundary 1.13/1.14
5: Boundary 1.14/1.15a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4b
ENST00000371823
4b
ENSE00001456196
chr1:
50574638-50574870
233
ELAV4_HUMAN
1-3
3
0
-
-
1.10d
ENST00000371823
10d
ENSE00001064508
chr1:
50610629-50610869
241
ELAV4_HUMAN
4-84
81
1
A:37-77
41
1.11a
ENST00000371823
11a
ENSE00001722912
chr1:
50642761-50642864
104
ELAV4_HUMAN
84-118
35
1
A:77-111
35
1.13
ENST00000371823
13
ENSE00001803839
chr1:
50659437-50659590
154
ELAV4_HUMAN
119-170
52
1
A:112-163
52
1.14
ENST00000371823
14
ENSE00001064512
chr1:
50661233-50661458
226
ELAV4_HUMAN
170-245
76
1
A:163-203
41
1.15a
ENST00000371823
15a
ENSE00001800957
chr1:
50663101-50663139
39
ELAV4_HUMAN
245-258
14
0
-
-
1.16a
ENST00000371823
16a
ENSE00001456193
chr1:
50666481-50667074
594
ELAV4_HUMAN
258-380
123
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1g2ea1 (A:37-118)
1b: SCOP_d1g2ea2 (A:119-203)
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(
)
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)
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Hu antigen D (Hud)
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1g2ea1
A:37-118
1b
d1g2ea2
A:119-203
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1g2eA02 (A:127-203)
1b: CATH_1g2eA01 (A:41-111)
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)
Organisms
(
)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
[unclassified]
(45)
1a
1g2eA02
A:127-203
1b
1g2eA01
A:41-111
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (38 KB)
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