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1G29
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (131 KB)
Biol.Unit 2 (258 KB)
Biol.Unit 3 (131 KB)
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(1)
Title
:
MALK
Authors
:
K. Diederichs, J. Diez, G. Greller, C. Mueller, J. Breed, C. Schnell, C. Vonrhein, W. Boos, W. Welte
Date
:
18 Oct 00 (Deposition) - 06 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : 1,2
Biol. Unit 1: 1,2 (1x)
Biol. Unit 2: 1,2 (2x)
Biol. Unit 3: 1,2 (1x)
Keywords
:
Atpase, Active Transport, Maltose Uptake And Regulation, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Diederichs, J. Diez, G. Greller, C. Muller, J. Breed, C. Schnell, C. Vonrhein, W. Boos, W. Welte
Crystal Structure Of Malk, The Atpase Subunit Of The Trehalose/Maltose Abc Transporter Of The Archaeon Thermococcus Litoralis.
Embo J. V. 19 5951 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(6, 57)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
2a: 1,4-DIETHYLENE DIOXIDE (DIOa)
2b: 1,4-DIETHYLENE DIOXIDE (DIOb)
2c: 1,4-DIETHYLENE DIOXIDE (DIOc)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
4a: SODIUM ION (NAa)
4aa: SODIUM ION (NAaa)
4ab: SODIUM ION (NAab)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
4g: SODIUM ION (NAg)
4h: SODIUM ION (NAh)
4i: SODIUM ION (NAi)
4j: SODIUM ION (NAj)
4k: SODIUM ION (NAk)
4l: SODIUM ION (NAl)
4m: SODIUM ION (NAm)
4n: SODIUM ION (NAn)
4o: SODIUM ION (NAo)
4p: SODIUM ION (NAp)
4q: SODIUM ION (NAq)
4r: SODIUM ION (NAr)
4s: SODIUM ION (NAs)
4t: SODIUM ION (NAt)
4u: SODIUM ION (NAu)
4v: SODIUM ION (NAv)
4w: SODIUM ION (NAw)
4x: SODIUM ION (NAx)
4y: SODIUM ION (NAy)
4z: SODIUM ION (NAz)
5a: AMMONIUM ION (NH4a)
5b: AMMONIUM ION (NH4b)
5c: AMMONIUM ION (NH4c)
6a: PYROPHOSPHATE 2- (POPa)
6b: PYROPHOSPHATE 2- (POPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
10
Ligand/Ion
CHLORIDE ION
2
DIO
3
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
3
MG
11
Ligand/Ion
MAGNESIUM ION
4
NA
28
Ligand/Ion
SODIUM ION
5
NH4
3
Ligand/Ion
AMMONIUM ION
6
POP
2
Ligand/Ion
PYROPHOSPHATE 2-
[
close Hetero Component info
]
Sites
(57, 57)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY 1:29 , LYS 1:183 , GLN 1:186 , ASP 1:208 , HOH 1:959
BINDING SITE FOR RESIDUE NH4 1 373
02
AC2
SOFTWARE
GLY 2:29 , LYS 2:183 , GLN 2:186 , ASP 2:208
BINDING SITE FOR RESIDUE NH4 2 373
03
AC3
SOFTWARE
ALA 1:180 , LYS 1:184 , GLU 2:347 , HOH 2:631 , HOH 2:646
BINDING SITE FOR RESIDUE NH4 2 374
04
AC4
SOFTWARE
ASP 2:293 , TYR 2:295 , ASP 2:356
BINDING SITE FOR RESIDUE MG 2 375
05
AC5
SOFTWARE
VAL 1:227 , VAL 1:236 , ALA 1:237 , ILE 1:240 , ARG 1:290
BINDING SITE FOR RESIDUE CL 1 374
06
AC6
SOFTWARE
VAL 2:227 , VAL 2:236 , ALA 2:237 , ILE 2:240 , ARG 2:290
BINDING SITE FOR RESIDUE CL 2 376
07
AC7
SOFTWARE
ALA 1:180 , THR 1:205 , HOH 1:834 , HOH 1:858 , ILE 2:316 , GLU 2:347
BINDING SITE FOR RESIDUE NA 2 377
08
AC8
SOFTWARE
GLU 1:318 , ARG 2:179 , HOH 2:516
BINDING SITE FOR RESIDUE CL 2 378
09
AC9
SOFTWARE
THR 1:43 , ARG 1:47 , HOH 1:878 , SER 2:89 , LEU 2:92
BINDING SITE FOR RESIDUE CL 1 375
10
BC1
SOFTWARE
GLU 1:292 , MG 1:392 , GLY 2:321 , SER 2:322 , SER 2:341
BINDING SITE FOR RESIDUE NA 1 376
11
BC2
SOFTWARE
ILE 1:316 , VAL 1:317 , GLU 1:347 , ALA 2:180 , THR 2:205 , HOH 2:516 , HOH 2:520
BINDING SITE FOR RESIDUE NA 1 377
12
BC3
SOFTWARE
GLU 2:292 , ASP 2:293 , LYS 2:359 , NA 2:388
BINDING SITE FOR RESIDUE MG 2 379
13
BC4
SOFTWARE
GLU 1:292 , ASP 1:293 , LYS 1:359 , NA 1:385
BINDING SITE FOR RESIDUE MG 1 378
14
BC5
SOFTWARE
SER 2:38 , GLY 2:39 , HOH 2:545
BINDING SITE FOR RESIDUE NA 2 380
15
BC6
SOFTWARE
LYS 1:11 , GLU 1:53 , HOH 1:841
BINDING SITE FOR RESIDUE NA 1 379
16
BC7
SOFTWARE
THR 2:17 , ARG 2:20 , ARG 2:215
BINDING SITE FOR RESIDUE CL 2 381
17
BC8
SOFTWARE
GLU 1:30 , HOH 1:970
BINDING SITE FOR RESIDUE NA 1 380
18
BC9
SOFTWARE
ASP 2:229 , HOH 2:645
BINDING SITE FOR RESIDUE NA 2 382
19
CC1
SOFTWARE
ASN 1:319 , ARG 1:324 , HOH 1:891 , MET 2:204 , PRO 2:224 , ASP 2:225
BINDING SITE FOR RESIDUE NA 2 383
20
CC2
SOFTWARE
ARG 1:121 , HOH 1:874
BINDING SITE FOR RESIDUE CL 1 381
21
CC3
SOFTWARE
GLU 2:315
BINDING SITE FOR RESIDUE NA 2 384
22
CC4
SOFTWARE
LYS 1:183 , THR 1:205 , HOH 1:858 , GLU 2:347 , HOH 2:525
BINDING SITE FOR RESIDUE MG 2 385
23
CC5
SOFTWARE
GLU 1:347 , HOH 1:863 , LYS 2:183 , THR 2:205 , HOH 2:520
BINDING SITE FOR RESIDUE NA 1 382
24
CC6
SOFTWARE
ASP 1:296 , MET 1:298 , HOH 1:1017
BINDING SITE FOR RESIDUE NA 1 383
25
CC7
SOFTWARE
LYS 1:79 , ASP 1:80 , LYS 2:11 , PHE 2:13 , GLU 2:53
BINDING SITE FOR RESIDUE MG 2 386
26
CC8
SOFTWARE
ARG 1:324 , HOH 1:925 , HOH 1:978 , ASP 2:225 , NA 2:394
BINDING SITE FOR RESIDUE MG 2 387
27
CC9
SOFTWARE
GLN 1:59 , ASP 1:69 , GLU 1:71 , LYS 1:72
BINDING SITE FOR RESIDUE MG 1 384
28
DC1
SOFTWARE
ASP 1:229 , LYS 1:359 , MG 1:378 , HOH 1:975
BINDING SITE FOR RESIDUE NA 1 385
29
DC2
SOFTWARE
GLU 1:181 , HOH 1:850
BINDING SITE FOR RESIDUE NA 1 386
30
DC3
SOFTWARE
ASP 1:225 , HOH 1:918
BINDING SITE FOR RESIDUE NA 1 387
31
DC4
SOFTWARE
ASP 1:225 , ARG 2:324 , SER 2:341
BINDING SITE FOR RESIDUE NA 1 388
32
DC5
SOFTWARE
ASP 2:229 , MG 2:379 , NA 2:424 , HOH 2:639
BINDING SITE FOR RESIDUE NA 2 388
33
DC6
SOFTWARE
ARG 1:209 , GLU 1:226 , HOH 1:922
BINDING SITE FOR RESIDUE NA 1 389
34
DC7
SOFTWARE
THR 2:43 , ASP 2:164
BINDING SITE FOR RESIDUE MG 2 389
35
DC8
SOFTWARE
GLU 2:181 , LYS 2:184
BINDING SITE FOR RESIDUE NA 2 390
36
DC9
SOFTWARE
HOH 1:928 , ASP 2:80
BINDING SITE FOR RESIDUE NA 2 391
37
EC1
SOFTWARE
GLU 2:30 , ARG 2:209
BINDING SITE FOR RESIDUE NA 2 392
38
EC2
SOFTWARE
ASP 1:229 , HOH 1:1016
BINDING SITE FOR RESIDUE NA 1 390
39
EC3
SOFTWARE
SER 2:223 , GLU 2:226
BINDING SITE FOR RESIDUE MG 2 393
40
EC4
SOFTWARE
ARG 1:324 , SER 1:341 , ASP 2:225 , MG 2:387 , HOH 2:648
BINDING SITE FOR RESIDUE NA 2 394
41
EC5
SOFTWARE
ARG 2:20 , ARG 2:215
BINDING SITE FOR RESIDUE CL 2 395
42
EC6
SOFTWARE
ARG 1:344
BINDING SITE FOR RESIDUE CL 1 391
43
EC7
SOFTWARE
ASP 1:229 , NA 1:376
BINDING SITE FOR RESIDUE MG 1 392
44
EC8
SOFTWARE
SER 1:341 , GLU 1:342 , HOH 1:847 , HOH 2:544 , HOH 2:651
BINDING SITE FOR RESIDUE MG 1 393
45
EC9
SOFTWARE
ALA 1:297 , ASP 1:352 , ARG 2:303
BINDING SITE FOR RESIDUE CL 2 396
46
FC1
SOFTWARE
GLU 1:131 , ARG 2:147
BINDING SITE FOR RESIDUE NA 1 394
47
FC2
SOFTWARE
ASP 2:356 , LYS 2:359
BINDING SITE FOR RESIDUE NA 2 397
48
FC3
SOFTWARE
GLU 1:347 , ALA 2:180 , LYS 2:184
BINDING SITE FOR RESIDUE NA 1 414
49
FC4
SOFTWARE
ASP 1:82 , ARG 1:156 , LYS 1:157
BINDING SITE FOR RESIDUE NA 1 422
50
FC5
SOFTWARE
ASP 2:229 , NA 2:388 , HOH 2:544
BINDING SITE FOR RESIDUE NA 2 424
51
FC6
SOFTWARE
ARG 2:121 , HOH 2:565
BINDING SITE FOR RESIDUE CL 2 430
52
FC7
SOFTWARE
GLU 2:54 , HOH 2:684
BINDING SITE FOR RESIDUE NA 2 439
53
FC8
SOFTWARE
TYR 1:93 , PRO 2:37 , SER 2:38 , GLY 2:39 , CYS 2:40 , GLY 2:41 , LYS 2:42 , THR 2:43 , THR 2:44 , HOH 2:680
BINDING SITE FOR RESIDUE POP 2 500
54
FC9
SOFTWARE
PRO 1:37 , SER 1:38 , GLY 1:39 , CYS 1:40 , GLY 1:41 , LYS 1:42 , THR 1:43 , THR 1:44 , HOH 1:836 , TYR 2:93 , HIS 2:95
BINDING SITE FOR RESIDUE POP 1 501
55
GC1
SOFTWARE
TRP 1:10 , ARG 1:57 , TRP 2:10 , ARG 2:57
BINDING SITE FOR RESIDUE DIO 1 830
56
GC2
SOFTWARE
GLY 1:14 , DIO 1:832 , SER 2:56
BINDING SITE FOR RESIDUE DIO 1 831
57
GC3
SOFTWARE
SER 1:56 , DIO 1:831 , GLY 2:14 , HOH 2:510
BINDING SITE FOR RESIDUE DIO 1 832
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ABC_TRANSPORTER_1 (1:140-154,2:140-154)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ABC_TRANSPORTER_1
PS00211
ABC transporters family signature.
MALK_THELN
140-154
2
1:140-154
2:140-154
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1g2913 (1:241-301)
1b: SCOP_d1g2914 (1:302-372)
1c: SCOP_d1g2923 (2:241-301)
1d: SCOP_d1g2924 (2:302-372)
2a: SCOP_d1g2912 (1:1-240)
2b: SCOP_d1g2922 (2:1-240)
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(
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Folds
(
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(
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
MOP-like
(40)
Family
:
ABC-transporter additional domain
(24)
Protein domain
:
Maltose transport protein MalK, C-terminal domain
(16)
Thermococcus litoralis [TaxId: 2265]
(1)
1a
d1g2913
1:241-301
1b
d1g2914
1:302-372
1c
d1g2923
2:241-301
1d
d1g2924
2:302-372
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
Maltose transport protein MalK, N-terminal domain
(16)
Thermococcus litoralis [TaxId: 2265]
(1)
2a
d1g2912
1:1-240
2b
d1g2922
2:1-240
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1g29101 (1:1-244)
1b: CATH_1g29201 (2:1-244)
2a: CATH_1g29103 (1:245-292,1:356-372)
2b: CATH_1g29203 (2:245-292,2:356-372)
3a: CATH_1g29102 (1:310-354)
3b: CATH_1g29202 (2:310-354)
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Architectures
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Topologies
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermococcus litoralis. Organism_taxid: 2265.
(1)
1a
1g29101
1:1-244
1b
1g29201
2:1-244
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.100, no name defined]
(113)
Thermococcus litoralis. Organism_taxid: 2265.
(1)
2a
1g29103
1:245-292,1:356-372
2b
1g29203
2:245-292,2:356-372
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Thermococcus litoralis. Organism_taxid: 2265.
(1)
3a
1g29102
1:310-354
3b
1g29202
2:310-354
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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