PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1G26
Asym. Unit
Info
Asym.Unit (76 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(10 )
Title
:
THE SOLUTION STRUCTURE OF A WELL-FOLDED PEPTIDE BASED ON THE 31-RESIDUE AMINO-TERMINAL SUBDOMAIN OF HUMAN GRANULIN A
Authors
:
D. Tolkatchev, A. Ng, W. Vranken, F. Ni
Date
:
17 Oct 00 (Deposition) - 01 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Granulin/Epithelin Protein Repeats, Beta-Hairpin Stack, Cytokine
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Tolkatchev, A. Ng, W. Vranken, F. Ni
Design And Solution Structure Of A Well-Folded Stack Of Two Beta-Hairpins Based On The Amino-Terminal Fragment Of Human Granulin A.
Biochemistry V. 39 2878 2000
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(1, 1)
Info
All Exons
Exon 1.9 (A:1-31 (gaps))
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.8a/1.9
2: Boundary 1.9/1.10b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000053867
1a
ENSE00001349955
chr17:
42422491-42422702
212
GRN_HUMAN
-
0
0
-
-
1.2
ENST00000053867
2
ENSE00002158819
chr17:
42426526-42426670
145
GRN_HUMAN
1-46
46
0
-
-
1.3
ENST00000053867
3
ENSE00001719716
chr17:
42426794-42426919
126
GRN_HUMAN
47-88
42
0
-
-
1.4
ENST00000053867
4
ENSE00001703280
chr17:
42427035-42427119
85
GRN_HUMAN
89-117
29
0
-
-
1.5
ENST00000053867
5
ENSE00001749873
chr17:
42427596-42427708
113
GRN_HUMAN
117-154
38
0
-
-
1.6b
ENST00000053867
6b
ENSE00000732204
chr17:
42427810-42427945
136
GRN_HUMAN
155-200
46
0
-
-
1.7
ENST00000053867
7
ENSE00000732203
chr17:
42428059-42428168
110
GRN_HUMAN
200-236
37
0
-
-
1.8a
ENST00000053867
8a
ENSE00001255741
chr17:
42428405-42428531
127
GRN_HUMAN
237-279
43
0
-
-
1.9
ENST00000053867
9
ENSE00000732201
chr17:
42428731-42428828
98
GRN_HUMAN
279-311
33
1
A:1-31 (gaps)
33
1.10b
ENST00000053867
10b
ENSE00000854270
chr17:
42428918-42429163
246
GRN_HUMAN
312-393
82
0
-
-
1.11
ENST00000053867
11
ENSE00000732199
chr17:
42429383-42429616
234
GRN_HUMAN
394-471
78
0
-
-
1.12a
ENST00000053867
12a
ENSE00000732197
chr17:
42429709-42429939
231
GRN_HUMAN
472-548
77
0
-
-
1.13
ENST00000053867
13
ENSE00001376066
chr17:
42430029-42430470
442
GRN_HUMAN
549-593
45
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1g26a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
Granulin repeat
(5)
Family
:
Granulin repeat
(5)
Protein domain
:
N-terminal domain of granulin-1
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1g26a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (76 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1G26
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
