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1G1T
Biol. Unit 1
Info
Asym.Unit (37 KB)
Biol.Unit 1 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E-SELECTIN LECTIN/EGF DOMAINS COMPLEXED WITH SLEX
Authors
:
W. S. Somers, R. T. Camphausen
Date
:
13 Oct 00 (Deposition) - 13 Oct 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lectin, Egf, Adhesion Molecule, Slex, Immune System, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. S. Somers, J. Tang, G. D. Shaw, R. T. Camphausen
Insights Into The Molecular Basis Of Leukocyte Tethering And Rolling Revealed By Structures Of P- And E-Selectin Bound To Sle(X) And Psgl-1.
Cell(Cambridge, Mass. ) V. 103 467 2000
(for further references see the
PDB file header
)
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Hetero Components
(4, 4)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-D-GALACTOSE (GALa)
4a: BETA-METHYL-N-ACETYL-D-GLUCOSAMINE (MAGa)
5a: O-SIALIC ACID (SIAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
4
MAG
1
Ligand/Ion
BETA-METHYL-N-ACETYL-D-GLUCOSAMINE
5
SIA
1
Ligand/Ion
O-SIALIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:48 , ARG A:97 , GLU A:98 , HOH A:329 , GAL A:602
BINDING SITE FOR RESIDUE SIA A 601
2
AC2
SOFTWARE
GLU A:92 , TYR A:94 , ARG A:97 , ASN A:105 , GLU A:107 , HOH A:326 , SIA A:601 , MAG A:603 , FUC A:604
BINDING SITE FOR RESIDUE GAL A 602
3
AC3
SOFTWARE
GAL A:602 , FUC A:604
BINDING SITE FOR RESIDUE MAG A 603
4
AC4
SOFTWARE
GLU A:80 , ASN A:82 , ASN A:83 , ASN A:105 , ASP A:106 , GLU A:107 , CA A:160 , GAL A:602 , MAG A:603
BINDING SITE FOR RESIDUE FUC A 604
5
AC5
SOFTWARE
GLU A:80 , ASN A:82 , ASN A:83 , ASN A:105 , ASP A:106 , FUC A:604
BINDING SITE FOR RESIDUE CA A 160
[
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_014301 (M10I, chain A, )
2: VAR_011790 (C109W, chain A, )
3: VAR_004191 (S128R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014301
M
31
I
LYAM2_HUMAN
Polymorphism
3917408
A
M
10
I
2
UniProt
VAR_011790
C
130
W
LYAM2_HUMAN
Polymorphism
5360
A
C
109
W
3
UniProt
VAR_004191
S
149
R
LYAM2_HUMAN
Polymorphism
5361
A
S
128
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(5, 5)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_1 (A:90-117)
2: EGF_3 (A:118-154)
3: EGF_1 (A:142-153)
4: EGF_2 (A:142-153)
5: SUSHI (A:157-157|-|-|-|-|-)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
LYAM2_HUMAN
111-138
1
A:90-117
2
EGF_3
PS50026
EGF-like domain profile.
LYAM2_HUMAN
139-175
1
A:118-154
3
EGF_1
PS00022
EGF-like domain signature 1.
LYAM2_HUMAN
163-174
1
A:142-153
4
EGF_2
PS01186
EGF-like domain signature 2.
LYAM2_HUMAN
163-174
1
A:142-153
5
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
LYAM2_HUMAN
178-239
240-301
315-364
378-427
441-490
491-549
1
A:157-157
-
-
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1g1ta1 (A:1-118)
2a: SCOP_d1g1ta2 (A:119-157)
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Classes
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)
(
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Folds
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
E-selectin, C-lectin domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1g1ta1
A:1-118
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
E-selectin, EGF-domain
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d1g1ta2
A:119-157
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1g1tA01 (A:1-119)
2a: CATH_1g1tA02 (A:120-157)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Human (Homo sapiens)
(80)
1a
1g1tA01
A:1-119
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Human (Homo sapiens)
(195)
2a
1g1tA02
A:120-157
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Protein
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Protein & NOT Site
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Chain A
Asymmetric Unit 1
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Asym.Unit (37 KB)
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