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1G0V
Asym. Unit
Info
Asym.Unit (70 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (126 KB)
Biol.Unit 3 (126 KB)
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(1)
Title
:
THE STRUCTURE OF PROTEINASE A COMPLEXED WITH A IA3 MUTANT, MVV
Authors
:
L. H. Phylip, W. Lees, B. G. Brownsey, D. Bur, B. M. Dunn, J. Winther, A. Gu M. Li, T. Copeland, A. Wlodawer, J. Kay
Date
:
09 Oct 00 (Deposition) - 21 Apr 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Biol. Unit 3: A,B (2x)
Keywords
:
Proteinase A, Mvv, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. H. Phylip, W. E. Lees, B. G. Brownsey, D. Bur, B. M. Dunn, J. R. Winther A. Gustchina, M. Li, T. Copeland, A. Wlodawer, J. Kay
The Potency And Specificity Of The Interaction Between The Ia3 Inhibitor And Its Target Aspartic Proteinase From Saccharomyces Cerevisiae.
J. Biol. Chem. V. 276 2023 2001
(for further references see the
PDB file header
)
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:149 , MAN A:328 , HOH A:568 , HOH A:577 , HOH A:600 , HOH A:693 , HOH A:705
BINDING SITE FOR RESIDUE BMA A 327
02
AC2
SOFTWARE
BMA A:327 , MAN A:329 , HOH A:630
BINDING SITE FOR RESIDUE MAN A 328
03
AC3
SOFTWARE
VAL A:134 , TYR A:138 , GLN A:142 , MAN A:328 , BMA A:330 , MAN A:333 , HOH A:526 , HOH A:562 , HOH A:590
BINDING SITE FOR RESIDUE MAN A 329
04
AC4
SOFTWARE
MAN A:329 , NAG A:331 , MAN A:335 , HOH A:536 , HOH A:554 , HOH A:561 , HOH A:630
BINDING SITE FOR RESIDUE BMA A 330
05
AC5
SOFTWARE
ASP A:131 , LYS A:132 , VAL A:134 , BMA A:330 , NAG A:332 , MAN A:333 , MAN A:334 , HOH A:509 , HOH A:561 , HOH A:598
BINDING SITE FOR RESIDUE NAG A 331
06
AC6
SOFTWARE
TYR A:64 , ASN A:67 , ASP A:100 , ASP A:131 , VAL A:133 , NAG A:331 , HOH A:517 , HOH A:593 , HOH A:598
BINDING SITE FOR RESIDUE NAG A 332
07
AC7
SOFTWARE
GLN A:142 , MAN A:329 , NAG A:331 , MAN A:334
BINDING SITE FOR RESIDUE MAN A 333
08
AC8
SOFTWARE
LYS A:65 , LYS A:98 , VAL A:134 , ASN A:139 , NAG A:331 , MAN A:333 , HOH A:509 , HOH A:527 , HOH A:684 , HOH A:688 , HOH A:718
BINDING SITE FOR RESIDUE MAN A 334
09
AC9
SOFTWARE
BMA A:330 , HOH A:636 , HOH A:651 , HOH A:658
BINDING SITE FOR RESIDUE MAN A 335
10
BC1
SOFTWARE
GLY A:264 , ASN A:266 , HOH A:643 , HOH A:694
BINDING SITE FOR RESIDUE NAG A 501
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (A:14-323)
2: ASP_PROTEASE (A:29-40|A:212-223)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
CARP_YEAST
91-402
1
A:14-323
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
CARP_YEAST
106-117
291-302
2
A:29-40
A:212-223
[
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Exons
(2, 2)
Info
All Exons
Exon 1.1 (B:3-31)
Exon 2.1 (A:0-326 (gaps))
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
3: Boundary -/2.1
4: Boundary 2.1/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YMR174C
1
YMR174C.1
XIII:610364-610158
207
IPA3_YEAST
1-68
68
1
B:3-31
29
2.1
YPL154C
1
YPL154C.1
XVI:260930-259713
1218
CARP_YEAST
1-405
405
1
A:0-326 (gaps)
330
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1g0vb_ (B:)
2a: SCOP_d1g0va_ (A:)
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Classes
(
)
(
)
Folds
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(
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Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Proteinase A inhibitor IA3
(3)
Family
:
Proteinase A inhibitor IA3
(3)
Protein domain
:
Proteinase A inhibitor IA3
(3)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(3)
1a
d1g0vb_
B:
Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Pepsin-like
(505)
Protein domain
:
Acid protease
(44)
Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
(11)
2a
d1g0va_
A:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1g0vA02 (A:171-325)
1b: CATH_1g0vA01 (A:0-170)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Baker's yeast (Saccharomyces cerevisiae)
(11)
1a
1g0vA02
A:171-325
1b
1g0vA01
A:0-170
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Atom Selection
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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Example Commands
Example Command
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (70 KB)
Header - Asym.Unit
Biol.Unit 1 (65 KB)
Header - Biol.Unit 1
Biol.Unit 2 (126 KB)
Header - Biol.Unit 2
Biol.Unit 3 (126 KB)
Header - Biol.Unit 3
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