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1FZW
Biol. Unit 2
Info
Asym.Unit (862 KB)
Biol.Unit 1 (430 KB)
Biol.Unit 2 (432 KB)
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(1)
Title
:
THE STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND REGULATION OF GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (RMLA). APO ENZYME.
Authors
:
W. Blankenfeldt, M. Asuncion, J. S. Lam, J. H. Naismith
Date
:
04 Oct 00 (Deposition) - 27 Dec 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Rhamnose, Nucleotidyltransferase, Pyrophosphorylase, Thymidylyltransferase, Allostery
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Blankenfeldt, M. Asuncion, J. S. Lam, J. H. Naismith
The Structural Basis Of The Catalytic Mechanism And Regulation Of Glucose-1-Phosphate Thymidylyltransferase (Rmla).
Embo J. V. 19 6652 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 10)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
10
Ligand/Ion
SULFATE ION
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Sites
(13, 13)
Info
All Sites
01: AC5 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC5
SOFTWARE
HIS E:116 , ASP E:117 , HIS E:119 , HOH E:6110 , HOH E:6270 , GLY H:218 , ARG H:219 , GLY H:220 , HOH H:6106 , HOH H:6174 , HOH H:6365
BINDING SITE FOR RESIDUE SO4 H 3604
02
AC6
SOFTWARE
HIS F:116 , ASP F:117 , HOH F:4712 , HOH F:4898 , HOH F:4928 , GLY G:218 , ARG G:219 , GLY G:220 , HOH G:4991 , HOH G:5003 , HOH G:5027
BINDING SITE FOR RESIDUE SO4 G 3605
03
AC7
SOFTWARE
GLY F:218 , ARG F:219 , GLY F:220 , HOH F:4765 , HOH F:4867 , HOH F:4874 , HIS G:116 , ASP G:117 , HOH G:4913
BINDING SITE FOR RESIDUE SO4 F 3606
04
AC8
SOFTWARE
GLY E:218 , ARG E:219 , GLY E:220 , HOH E:6161 , HOH E:6177 , HOH E:6202 , HIS H:116 , ASP H:117 , HOH H:6142 , HOH H:6222
BINDING SITE FOR RESIDUE SO4 E 3607
05
AC9
SOFTWARE
ARG A:128 , GLU A:215 , HOH A:3801 , ASP F:151 , GLN F:152 , HOH F:4877 , HOH F:4938
BINDING SITE FOR RESIDUE SO4 A 3700
06
BC1
SOFTWARE
ARG B:128 , GLU B:215 , HOH B:3986 , HOH B:4011 , ASP E:151 , GLN E:152
BINDING SITE FOR RESIDUE SO4 B 3701
07
BC4
SOFTWARE
ASP D:151 , GLN D:152 , ARG H:128 , GLU H:215 , HOH H:6192 , HOH H:6269
BINDING SITE FOR RESIDUE SO4 D 3800
08
BC5
SOFTWARE
ARG F:128 , GLN F:129 , THR F:130
BINDING SITE FOR RESIDUE SO4 F 4700
09
BC6
SOFTWARE
ARG G:62 , HOH G:5186 , ARG H:62 , GLN H:65
BINDING SITE FOR RESIDUE SO4 G 4900
10
BC7
SOFTWARE
ASP C:151 , GLN C:152 , ARG G:128 , GLU G:215 , HOH G:5068 , HOH G:5204
BINDING SITE FOR RESIDUE SO4 G 3704
11
BC9
SOFTWARE
ARG E:62 , HOH E:6355 , ARG F:62
BINDING SITE FOR RESIDUE SO4 E 5001
12
CC1
SOFTWARE
GLN E:127 , ARG E:128 , GLN E:129 , THR E:130 , HOH E:6265
BINDING SITE FOR RESIDUE SO4 E 6100
13
CC2
SOFTWARE
SER H:12 , GLY H:13 , THR H:14 , ARG H:15
BINDING SITE FOR RESIDUE SO4 H 6101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1fzwa_ (A:)
1b: SCOP_d1fzwb_ (B:)
1c: SCOP_d1fzwc_ (C:)
1d: SCOP_d1fzwd_ (D:)
1e: SCOP_d1fzwe_ (E:)
1f: SCOP_d1fzwf_ (F:)
1g: SCOP_d1fzwg_ (G:)
1h: SCOP_d1fzwh_ (H:)
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)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
glucose-1-phosphate thymidylyltransferase
(43)
Protein domain
:
RmlA (RfbA)
(27)
Pseudomonas aeruginosa [TaxId: 287]
(9)
1a
d1fzwa_
A:
1b
d1fzwb_
B:
1c
d1fzwc_
C:
1d
d1fzwd_
D:
1e
d1fzwe_
E:
1f
d1fzwf_
F:
1g
d1fzwg_
G:
1h
d1fzwh_
H:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1fzwA00 (A:2-293)
1b: CATH_1fzwB00 (B:2-293)
1c: CATH_1fzwD00 (D:2-293)
1d: CATH_1fzwE00 (E:2-293)
1e: CATH_1fzwG00 (G:2-293)
1f: CATH_1fzwH00 (H:2-293)
1g: CATH_1fzwC00 (C:1-293)
1h: CATH_1fzwF00 (F:1-293)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Pseudomonas aeruginosa. Organism_taxid: 287.
(7)
1a
1fzwA00
A:2-293
1b
1fzwB00
B:2-293
1c
1fzwD00
D:2-293
1d
1fzwE00
E:2-293
1e
1fzwG00
G:2-293
1f
1fzwH00
H:2-293
1g
1fzwC00
C:1-293
1h
1fzwF00
F:1-293
[
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Pfam Domains
(0, 0)
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Chain H
Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (862 KB)
Header - Asym.Unit
Biol.Unit 1 (430 KB)
Header - Biol.Unit 1
Biol.Unit 2 (432 KB)
Header - Biol.Unit 2
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