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1FYV
Asym. Unit
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Asym.Unit (32 KB)
Biol.Unit 1 (29 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN TLR1
Authors
:
Y. Xu, X. Tao, B. Shen, T. Horng, R. Medzhitov, J. L. Manley, L. Tong
Date
:
03 Oct 00 (Deposition) - 22 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta-Alpha-Beta Fold Parallel Beta Sheet, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Xu, X. Tao, B. Shen, T. Horng, R. Medzhitov, J. L. Manley, L. Tong
Structural Basis For Signal Transduction By The Toll/Interleukin-1 Receptor Domains.
Nature V. 408 111 2000
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
2
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_052358 (L631R, chain A, )
2: VAR_066346 (V651A, chain A, )
3: VAR_066347 (V674A, chain A, )
4: VAR_066348 (H720P, chain A, )
5: VAR_052359 (P733L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_052358
L
631
R
TLR1_HUMAN
Polymorphism
5743619
A
L
631
R
2
UniProt
VAR_066346
V
651
A
TLR1_HUMAN
Unclassified
---
A
V
651
A
3
UniProt
VAR_066347
V
674
A
TLR1_HUMAN
Polymorphism
---
A
V
674
A
4
UniProt
VAR_066348
H
720
P
TLR1_HUMAN
Polymorphism
113706342
A
H
720
P
5
UniProt
VAR_052359
P
733
L
TLR1_HUMAN
Polymorphism
5743621
A
P
733
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TIR (A:635-779)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TIR
PS50104
TIR domain profile.
TLR1_HUMAN
635-779
1
A:635-779
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Exons
(1, 1)
Info
All Exons
Exon 1.6f (A:625-785)
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All Exon Boundaries
1: Boundary 1.5b/1.6f
2: Boundary 1.6f/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3d
ENST00000308979
3d
ENSE00001245751
chr4:
38806412-38806375
38
TLR1_HUMAN
-
0
0
-
-
1.4a
ENST00000308979
4a
ENSE00001245741
chr4:
38806003-38805927
77
TLR1_HUMAN
-
0
0
-
-
1.5b
ENST00000308979
5b
ENSE00001245734
chr4:
38802569-38802478
92
TLR1_HUMAN
-
0
0
-
-
1.6f
ENST00000308979
6f
ENSE00001208820
chr4:
38800519-38797880
2640
TLR1_HUMAN
1-809
809
1
A:625-785
161
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1fyva_ (A:)
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(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Toll/Interleukin receptor TIR domain
(9)
Family
:
Toll/Interleukin receptor TIR domain
(5)
Protein domain
:
Toll-like receptor 1, TLR1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1fyva_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1fyvA00 (A:625-785)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.10140, no name defined]
(8)
Human (Homo sapiens)
(8)
1a
1fyvA00
A:625-785
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Pfam Domains
(0, 0)
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all PFAM domains
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Asymmetric Unit 1
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Asym.Unit (32 KB)
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