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1FX8
Asym. Unit
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Asym.Unit (49 KB)
Biol.Unit 1 (168 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE E. COLI GLYCEROL FACILITATOR (GLPF) WITH SUBSTRATE GLYCEROL
Authors
:
D. Fu, A. Libson, L. J. W. Miercke, C. Weitzman, P. Nollert, R. M. Stroud
Date
:
25 Sep 00 (Deposition) - 01 Nov 00 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Glycerol-Conducting Membrane Channel Protein, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Fu, A. Libson, L. J. Miercke, C. Weitzman, P. Nollert, J. Krucinski, R. M. Stroud
Structure Of A Glycerol-Conducting Channel And The Basis Fo Its Selectivity.
Science V. 290 481 2000
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: B-OCTYLGLUCOSIDE (BOGa)
1b: B-OCTYLGLUCOSIDE (BOGb)
1c: B-OCTYLGLUCOSIDE (BOGc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BOG
3
Ligand/Ion
B-OCTYLGLUCOSIDE
2
GOL
3
Ligand/Ion
GLYCEROL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:105 , TYR A:109 , PHE A:113 , ARG A:123 , LEU A:216 , ALA A:217 , GLY A:218 , HOH A:337 , HOH A:340 , HOH A:357 , HOH A:403 , BOG A:475
BINDING SITE FOR RESIDUE BOG A 473
2
AC2
SOFTWARE
VAL A:126 , GLU A:127 , PHE A:208 , ASN A:221 , LEU A:237 , HOH A:320
BINDING SITE FOR RESIDUE BOG A 474
3
AC3
SOFTWARE
TYR A:105 , GLY A:106 , PHE A:213 , HOH A:403 , BOG A:473
BINDING SITE FOR RESIDUE BOG A 475
4
AC4
SOFTWARE
TRP A:48 , GLY A:199 , PHE A:200 , ALA A:201 , ARG A:206 , HOH A:330 , HOH A:349
BINDING SITE FOR RESIDUE GOL A 662
5
AC5
SOFTWARE
TYR A:138 , PRO A:139 , ASN A:140 , PRO A:141 , PRO A:196 , GLY A:199 , HOH A:354 , HOH A:360 , HOH A:372 , HOH A:383
BINDING SITE FOR RESIDUE GOL A 661
6
AC6
SOFTWARE
HIS A:66 , LEU A:67 , ASN A:68 , ILE A:187 , ASN A:203 , HOH A:349
BINDING SITE FOR RESIDUE GOL A 663
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_GLPF_ECOLI_001 (V126I, chain A, )
2: VAR_GLPF_ECOLI_002 (M160I, chain A, )
3: VAR_GLPF_ECOLI_003 (G239S, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_GLPF_ECOLI_001
*
V
126
I
GLPF_ECOLI
---
---
A
V
126
I
2
UniProt
VAR_GLPF_ECOLI_002
*
M
160
I
GLPF_ECOLI
---
---
A
M
160
I
3
UniProt
VAR_GLPF_ECOLI_003
*
G
239
S
GLPF_ECOLI
---
---
A
G
239
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: MIP (A:66-74,A:66-74,A:66-74)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MIP
PS00221
MIP family signature.
GLPF_ECO57
66-74
1
A:66-74
GLPF_ECOL6
66-74
1
A:66-74
GLPF_ECOLI
66-74
1
A:66-74
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1fx8a_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Aquaporin-like
(34)
Superfamily
:
Aquaporin-like
(34)
Family
:
Aquaporin-like
(22)
Protein domain
:
Glycerol uptake facilitator protein GlpF
(4)
Escherichia coli [TaxId: 562]
(4)
1a
d1fx8a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1fx8A00 (A:6-259)
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)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glycerol uptake facilitator protein
(37)
Homologous Superfamily
:
Glycerol uptake facilitator protein.
(37)
Escherichia coli. Organism_taxid: 562.
(4)
1a
1fx8A00
A:6-259
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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