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1FW6
Biol. Unit 1
Info
Asym.Unit (275 KB)
Biol.Unit 1 (266 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TAQ MUTS-DNA-ADP TERNARY COMPLEX
Authors
:
M. S. Junop, G. Obmolova, K. Rausch, P. Hsieh, W. Yang
Date
:
21 Sep 00 (Deposition) - 19 Feb 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Protein-Dna Complex, Multi-Domain Structure, Kinked Dna, Abc Atpase, Replication/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. S. Junop, G. Obmolova, K. Rausch, P. Hsieh, W. Yang
Composite Active Site Of An Abc Atpase: Muts Uses Atp To Verify Mismatch Recognition And Authorize Dna Repair.
Mol. Cell V. 7 1 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 32)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MSE
26
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
4
Ligand/Ion
SULFATE ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:590 , ADP A:999 , HOH A:1915 , HOH A:1917 , HOH B:121
BINDING SITE FOR RESIDUE MG A 851
2
AC2
SOFTWARE
PRO A:584 , ASN A:585 , HIS A:696 , SER A:736 , TYR A:737 , GLY A:738 , HOH A:1904 , THR B:1668
BINDING SITE FOR RESIDUE SO4 A 852
3
AC3
SOFTWARE
HOH A:1951 , THR B:1638
BINDING SITE FOR RESIDUE SO4 B 853
4
AC4
SOFTWARE
HOH B:141 , HOH B:142 , HOH B:143 , HOH B:144 , SER B:1590 , ADP B:1999
BINDING SITE FOR RESIDUE MG B 1851
5
AC5
SOFTWARE
THR A:668 , PRO B:1584 , ASN B:1585 , HIS B:1696 , SER B:1736 , TYR B:1737
BINDING SITE FOR RESIDUE SO4 B 1852
6
AC6
SOFTWARE
SER A:637 , THR A:638 , HOH A:1918 , ASN B:1585 , ARG B:1666
BINDING SITE FOR RESIDUE SO4 A 1853
7
AC7
SOFTWARE
GLU A:566 , PHE A:567 , VAL A:568 , ASN A:585 , MSE A:586 , ALA A:587 , GLY A:588 , LYS A:589 , SER A:590 , THR A:591 , HIS A:726 , MG A:851 , HOH A:1864 , HOH A:1869 , HOH A:1915 , HOH A:1916 , HOH A:1917 , HOH A:1950
BINDING SITE FOR RESIDUE ADP A 999
8
AC8
SOFTWARE
HOH B:120 , HOH B:141 , HOH B:142 , HOH B:143 , HOH B:165 , GLU B:1566 , PHE B:1567 , VAL B:1568 , PRO B:1584 , ASN B:1585 , MSE B:1586 , ALA B:1587 , GLY B:1588 , LYS B:1589 , SER B:1590 , THR B:1591 , HIS B:1726 , MG B:1851
BINDING SITE FOR RESIDUE ADP B 1999
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: DNA_MISMATCH_REPAIR_2 (A:657-673,B:1657-1673)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNA_MISMATCH_REPAIR_2
PS00486
DNA mismatch repair proteins mutS family signature.
MUTS_THEAQ
657-673
2
A:657-673
B:1657-1673
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1fw6a1 (A:267-541)
1b: SCOP_d1fw6b1 (B:1267-1541)
2a: SCOP_d1fw6a4 (A:1-120)
2b: SCOP_d1fw6b4 (B:1001-1120)
3a: SCOP_d1fw6a2 (A:542-765)
3b: SCOP_d1fw6b2 (B:1542-1762)
4a: SCOP_d1fw6a3 (A:121-266)
4b: SCOP_d1fw6b3 (B:1121-1266)
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Classes
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)
(
)
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)
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)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA repair protein MutS, domain III
(14)
Superfamily
:
DNA repair protein MutS, domain III
(14)
Family
:
DNA repair protein MutS, domain III
(12)
Protein domain
:
DNA repair protein MutS, domain III
(12)
Thermus aquaticus [TaxId: 271]
(4)
1a
d1fw6a1
A:267-541
1b
d1fw6b1
B:1267-1541
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MutS N-terminal domain-like
(18)
Superfamily
:
DNA repair protein MutS, domain I
(13)
Family
:
DNA repair protein MutS, domain I
(11)
Protein domain
:
DNA repair protein MutS, domain I
(11)
Thermus aquaticus [TaxId: 271]
(3)
2a
d1fw6a4
A:1-120
2b
d1fw6b4
B:1001-1120
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
ABC transporter ATPase domain-like
(94)
Protein domain
:
DNA repair protein MutS, the C-terminal domain
(12)
Thermus aquaticus [TaxId: 271]
(4)
3a
d1fw6a2
A:542-765
3b
d1fw6b2
B:1542-1762
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
DNA repair protein MutS, domain II
(14)
Family
:
DNA repair protein MutS, domain II
(12)
Protein domain
:
DNA repair protein MutS, domain II
(12)
Thermus aquaticus [TaxId: 271]
(4)
4a
d1fw6a3
A:121-266
4b
d1fw6b3
B:1121-1266
[
close SCOP info
]
CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1fw6A02 (A:131-248)
1b: CATH_1fw6B02 (B:1131-1248)
2a: CATH_1fw6B01 (B:1002-1126)
2b: CATH_1fw6A01 (A:2-126)
3a: CATH_1fw6B05 (B:1542-1761)
3b: CATH_1fw6A05 (A:542-765)
4a: CATH_1fw6A03 (A:249-368,A:513-541)
4b: CATH_1fw6B03 (B:1249-1368,B:1513-1541)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.110, no name defined]
(14)
[unclassified]
(4)
1a
1fw6A02
A:131-248
1b
1fw6B02
B:1131-1248
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
MutS, DNA mismatch repair protein, domain I
(15)
Homologous Superfamily
:
[code=3.40.1170.10, no name defined]
(13)
[unclassified]
(4)
2a
1fw6B01
B:1002-1126
2b
1fw6A01
A:2-126
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
[unclassified]
(24)
3a
1fw6B05
B:1542-1761
3b
1fw6A05
A:542-765
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
MutS, DNA mismatch repair protein; Chain A, domain 3
(14)
Homologous Superfamily
:
[code=1.10.1420.10, no name defined]
(14)
[unclassified]
(4)
4a
1fw6A03
A:249-368,A:513-541
4b
1fw6B03
B:1249-1368,B:1513-1541
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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