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1FVO
Biol. Unit 2
Info
Asym.Unit (109 KB)
Biol.Unit 1 (156 KB)
Biol.Unit 2 (156 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ORNITHINE TRANSCARBAMYLASE COMPLEXED WITH CARBAMOYL PHOSPHATE
Authors
:
D. Shi, H. Morizono, X. Yu, N. M. Allewell, M. Tuchman
Date
:
20 Sep 00 (Deposition) - 04 Apr 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Two Domains, Alpha/Beta Topology, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Shi, H. Morizono, X. Yu, L. Tong, N. M. Allewell, M. Tuchman
Human Ornithine Transcarbamylase: Crystallographic Insights Into Substrate Recognition And Conformational Changes.
Biochem. J. V. 354 501 2001
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPa)
1b: PHOSPHORIC ACID MONO(FORMAMIDE)EST... (CPb)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(1, 1)
Info
All Sites
1: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
SER B:90 , THR B:91 , ARG B:92 , THR B:93 , HIS B:117 , ARG B:141 , HIS B:168 , GLN B:171 , CYS B:303 , LEU B:304 , ARG B:330
BINDING SITE FOR RESIDUE CP B 355
[
close Site info
]
SAPs(SNPs)/Variants
(116, 348)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
001: VAR_004844 (G39C, chain B, )
002: VAR_004845 (R40C, chain B, )
003: VAR_004846 (R40H, chain B, )
004: VAR_004847 (L43F, chain B, )
005: VAR_004848 (T44I, chain B, )
006: VAR_004849 (L45P, chain B, )
007: VAR_004850 (L45V, chain B, )
008: VAR_004851 (K46R, chain B, )
009: VAR_004852 (N47I, chain B, )
010: VAR_004853 (G50R, chain B, )
011: VAR_004854 (Y55D, chain B, )
012: VAR_004855 (M56T, chain B, )
013: VAR_004856 (S60L, chain B, )
014: VAR_004857 (L63P, chain B, )
015: VAR_004858 (G79E, chain B, )
016: VAR_004860 (G83D, chain B, )
017: VAR_004861 (G83R, chain B, )
018: VAR_004862 (E87K, chain B, )
019: VAR_004863 (K88N, chain B, )
020: VAR_004864 (S90R, chain B, )
021: VAR_004865 (R92Q, chain B, )
022: VAR_004866 (T93A, chain B, )
023: VAR_004867 (R94T, chain B, )
024: VAR_004868 (G100D, chain B, )
025: VAR_004869 (F101L, chain B, )
026: VAR_004870 (A102E, chain B, )
027: VAR_004871 (L111P, chain B, )
028: VAR_004872 (H117L, chain B, )
029: VAR_004873 (H117R, chain B, )
030: VAR_004874 (T125M, chain B, )
031: VAR_004875 (D126G, chain B, )
032: VAR_004876 (R129H, chain B, )
033: VAR_004877 (L139S, chain B, )
034: VAR_010605 (A140P, chain B, )
035: VAR_004878 (R141P, chain B, )
036: VAR_004879 (R141Q, chain B, )
037: VAR_004880 (L148F, chain B, )
038: VAR_004881 (I159T, chain B, )
039: VAR_012651 (I160S, chain B, )
040: VAR_004882 (N161S, chain B, )
041: VAR_004883 (G162R, chain B, )
042: VAR_004884 (H168Q, chain B, )
043: VAR_004885 (H168R, chain B, )
044: VAR_009233 (I172F, chain B, )
045: VAR_004886 (I172M, chain B, )
046: VAR_004887 (A174P, chain B, )
047: VAR_004888 (D175V, chain B, )
048: VAR_004889 (Y176C, chain B, )
049: VAR_004890 (T178M, chain B, )
050: VAR_004892 (Q180H, chain B, )
051: VAR_004893 (E181G, chain B, )
052: VAR_004894 (H182L, chain B, )
053: VAR_004895 (Y183C, chain B, )
054: VAR_004896 (Y183D, chain B, )
055: VAR_004897 (G188R, chain B, )
056: VAR_009234 (G188V, chain B, )
057: VAR_012652 (L191F, chain B, )
058: VAR_004898 (S192R, chain B, )
059: VAR_004899 (G195R, chain B, )
060: VAR_004900 (D196V, chain B, )
061: VAR_004901 (D196Y, chain B, )
062: VAR_004902 (G197E, chain B, )
063: VAR_009235 (G197R, chain B, )
064: VAR_010606 (N198K, chain B, )
065: VAR_004903 (L201P, chain B, )
066: VAR_004904 (H202Y, chain B, )
067: VAR_004905 (S203C, chain B, )
068: VAR_012653 (M206I, chain B, )
069: VAR_004906 (M206R, chain B, )
070: VAR_004907 (S207R, chain B, )
071: VAR_004908 (A208T, chain B, )
072: VAR_004909 (A209V, chain B, )
073: VAR_004910 (M213K, chain B, )
074: VAR_010607 (H214Y, chain B, )
075: VAR_004911 (Q216E, chain B, )
076: VAR_004912 (P220A, chain B, )
077: VAR_004913 (P225L, chain B, )
078: VAR_004914 (P225R, chain B, )
079: VAR_004915 (P225T, chain B, )
080: VAR_004916 (T242I, chain B, )
081: VAR_004917 (L244Q, chain B, )
082: VAR_004918 (T247K, chain B, )
083: VAR_004919 (H255P, chain B, )
084: VAR_010608 (T262K, chain B, )
085: VAR_004920 (D263G, chain B, )
086: VAR_004921 (D263N, chain B, )
087: VAR_004922 (T264A, chain B, )
088: VAR_004923 (T264I, chain B, )
089: VAR_010609 (W265L, chain B, )
090: VAR_004924 (S267R, chain B, )
091: VAR_004925 (M268T, chain B, )
092: VAR_004926 (G269E, chain B, )
093: VAR_004927 (R270R, chain B, )
094: VAR_004929 (R277Q, chain B, )
095: VAR_004930 (R277W, chain B, )
096: VAR_012654 (L301F, chain B, )
097: VAR_004931 (H302L, chain B, )
098: VAR_004932 (H302Q, chain B, )
099: VAR_004933 (H302Y, chain B, )
100: VAR_004934 (C303R, chain B, )
101: VAR_004935 (C303Y, chain B, )
102: VAR_004936 (L304F, chain B, )
103: VAR_012655 (P305H, chain B, )
104: VAR_004938 (R320L, chain B, )
105: VAR_010610 (E326K, chain B, )
106: VAR_004939 (R330G, chain B, )
107: VAR_012656 (T333A, chain B, )
108: VAR_004940 (A336S, chain B, )
109: VAR_004941 (V337L, chain B, )
110: VAR_004942 (V339L, chain B, )
111: VAR_004943 (S340P, chain B, )
112: VAR_012657 (L341P, chain B, )
113: VAR_004944 (T343K, chain B, )
114: VAR_004946 (Y345C, chain B, )
115: VAR_004947 (Y345D, chain B, )
116: VAR_004948 (F354C, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
001
UniProt
VAR_004844
G
39
C
OTC_HUMAN
Disease (OTCD)
---
B
G
39
C
002
UniProt
VAR_004845
R
40
C
OTC_HUMAN
Disease (OTCD)
---
B
R
40
C
003
UniProt
VAR_004846
R
40
H
OTC_HUMAN
Disease (OTCD)
---
B
R
40
H
004
UniProt
VAR_004847
L
43
F
OTC_HUMAN
Polymorphism
---
B
L
43
F
005
UniProt
VAR_004848
T
44
I
OTC_HUMAN
Disease (OTCD)
---
B
T
44
I
006
UniProt
VAR_004849
L
45
P
OTC_HUMAN
Disease (OTCD)
---
B
L
45
P
007
UniProt
VAR_004850
L
45
V
OTC_HUMAN
Disease (OTCD)
---
B
L
45
V
008
UniProt
VAR_004851
K
46
R
OTC_HUMAN
Polymorphism
1800321
B
K
46
R
009
UniProt
VAR_004852
N
47
I
OTC_HUMAN
Disease (OTCD)
---
B
N
47
I
010
UniProt
VAR_004853
G
50
R
OTC_HUMAN
Disease (OTCD)
---
B
G
50
R
011
UniProt
VAR_004854
Y
55
D
OTC_HUMAN
Disease (OTCD)
---
B
Y
55
D
012
UniProt
VAR_004855
M
56
T
OTC_HUMAN
Disease (OTCD)
---
B
M
56
T
013
UniProt
VAR_004856
S
60
L
OTC_HUMAN
Disease (OTCD)
---
B
S
60
L
014
UniProt
VAR_004857
L
63
P
OTC_HUMAN
Disease (OTCD)
---
B
L
63
P
015
UniProt
VAR_004858
G
79
E
OTC_HUMAN
Disease (OTCD)
---
B
G
79
E
016
UniProt
VAR_004860
G
83
D
OTC_HUMAN
Disease (OTCD)
---
B
G
83
D
017
UniProt
VAR_004861
G
83
R
OTC_HUMAN
Disease (OTCD)
---
B
G
83
R
018
UniProt
VAR_004862
E
87
K
OTC_HUMAN
Disease (OTCD)
---
B
E
87
K
019
UniProt
VAR_004863
K
88
N
OTC_HUMAN
Disease (OTCD)
---
B
K
88
N
020
UniProt
VAR_004864
S
90
R
OTC_HUMAN
Disease (OTCD)
---
B
S
90
R
021
UniProt
VAR_004865
R
92
Q
OTC_HUMAN
Disease (OTCD)
---
B
R
92
Q
022
UniProt
VAR_004866
T
93
A
OTC_HUMAN
Disease (OTCD)
---
B
T
93
A
023
UniProt
VAR_004867
R
94
T
OTC_HUMAN
Disease (OTCD)
---
B
R
94
T
024
UniProt
VAR_004868
G
100
D
OTC_HUMAN
Disease (OTCD)
---
B
G
100
D
025
UniProt
VAR_004869
F
101
L
OTC_HUMAN
Polymorphism
---
B
F
101
L
026
UniProt
VAR_004870
A
102
E
OTC_HUMAN
Disease (OTCD)
---
B
A
102
E
027
UniProt
VAR_004871
L
111
P
OTC_HUMAN
Polymorphism
1800324
B
L
111
P
028
UniProt
VAR_004872
H
117
L
OTC_HUMAN
Disease (OTCD)
---
B
H
117
L
029
UniProt
VAR_004873
H
117
R
OTC_HUMAN
Disease (OTCD)
---
B
H
117
R
030
UniProt
VAR_004874
T
125
M
OTC_HUMAN
Disease (OTCD)
---
B
T
125
M
031
UniProt
VAR_004875
D
126
G
OTC_HUMAN
Disease (OTCD)
---
B
D
126
G
032
UniProt
VAR_004876
R
129
H
OTC_HUMAN
Disease (OTCD)
---
B
R
129
H
033
UniProt
VAR_004877
L
139
S
OTC_HUMAN
Disease (OTCD)
---
B
L
139
S
034
UniProt
VAR_010605
A
140
P
OTC_HUMAN
Disease (OTCD)
---
B
A
140
P
035
UniProt
VAR_004878
R
141
P
OTC_HUMAN
Disease (OTCD)
---
B
R
141
P
036
UniProt
VAR_004879
R
141
Q
OTC_HUMAN
Disease (OTCD)
---
B
R
141
Q
037
UniProt
VAR_004880
L
148
F
OTC_HUMAN
Disease (OTCD)
---
B
L
148
F
038
UniProt
VAR_004881
I
159
T
OTC_HUMAN
Disease (OTCD)
---
B
I
159
T
039
UniProt
VAR_012651
I
160
S
OTC_HUMAN
Disease (OTCD)
---
B
I
160
S
040
UniProt
VAR_004882
N
161
S
OTC_HUMAN
Disease (OTCD)
---
B
N
161
S
041
UniProt
VAR_004883
G
162
R
OTC_HUMAN
Disease (OTCD)
---
B
G
162
R
042
UniProt
VAR_004884
H
168
Q
OTC_HUMAN
Disease (OTCD)
---
B
H
168
Q
043
UniProt
VAR_004885
H
168
R
OTC_HUMAN
Disease (OTCD)
---
B
H
168
R
044
UniProt
VAR_009233
I
172
F
OTC_HUMAN
Disease (OTCD)
---
B
I
172
F
045
UniProt
VAR_004886
I
172
M
OTC_HUMAN
Disease (OTCD)
---
B
I
172
M
046
UniProt
VAR_004887
A
174
P
OTC_HUMAN
Disease (OTCD)
---
B
A
174
P
047
UniProt
VAR_004888
D
175
V
OTC_HUMAN
Disease (OTCD)
---
B
D
175
V
048
UniProt
VAR_004889
Y
176
C
OTC_HUMAN
Disease (OTCD)
---
B
Y
176
C
049
UniProt
VAR_004890
T
178
M
OTC_HUMAN
Disease (OTCD)
---
B
T
178
M
050
UniProt
VAR_004892
Q
180
H
OTC_HUMAN
Disease (OTCD)
---
B
Q
180
H
051
UniProt
VAR_004893
E
181
G
OTC_HUMAN
Disease (OTCD)
---
B
E
181
G
052
UniProt
VAR_004894
H
182
L
OTC_HUMAN
Disease (OTCD)
---
B
H
182
L
053
UniProt
VAR_004895
Y
183
C
OTC_HUMAN
Disease (OTCD)
---
B
Y
183
C
054
UniProt
VAR_004896
Y
183
D
OTC_HUMAN
Disease (OTCD)
---
B
Y
183
D
055
UniProt
VAR_004897
G
188
R
OTC_HUMAN
Disease (OTCD)
---
B
G
188
R
056
UniProt
VAR_009234
G
188
V
OTC_HUMAN
Disease (OTCD)
---
B
G
188
V
057
UniProt
VAR_012652
L
191
F
OTC_HUMAN
Disease (OTCD)
---
B
L
191
F
058
UniProt
VAR_004898
S
192
R
OTC_HUMAN
Disease (OTCD)
---
B
S
192
R
059
UniProt
VAR_004899
G
195
R
OTC_HUMAN
Disease (OTCD)
---
B
G
195
R
060
UniProt
VAR_004900
D
196
V
OTC_HUMAN
Disease (OTCD)
---
B
D
196
V
061
UniProt
VAR_004901
D
196
Y
OTC_HUMAN
Disease (OTCD)
---
B
D
196
Y
062
UniProt
VAR_004902
G
197
E
OTC_HUMAN
Disease (OTCD)
---
B
G
197
E
063
UniProt
VAR_009235
G
197
R
OTC_HUMAN
Disease (OTCD)
---
B
G
197
R
064
UniProt
VAR_010606
N
198
K
OTC_HUMAN
Disease (OTCD)
---
B
N
198
K
065
UniProt
VAR_004903
L
201
P
OTC_HUMAN
Disease (OTCD)
---
B
L
201
P
066
UniProt
VAR_004904
H
202
Y
OTC_HUMAN
Disease (OTCD)
---
B
H
202
Y
067
UniProt
VAR_004905
S
203
C
OTC_HUMAN
Disease (OTCD)
---
B
S
203
C
068
UniProt
VAR_012653
M
206
I
OTC_HUMAN
Disease (OTCD)
---
B
M
206
I
069
UniProt
VAR_004906
M
206
R
OTC_HUMAN
Disease (OTCD)
---
B
M
206
R
070
UniProt
VAR_004907
S
207
R
OTC_HUMAN
Disease (OTCD)
---
B
S
207
R
071
UniProt
VAR_004908
A
208
T
OTC_HUMAN
Disease (OTCD)
---
B
A
208
T
072
UniProt
VAR_004909
A
209
V
OTC_HUMAN
Disease (OTCD)
---
B
A
209
V
073
UniProt
VAR_004910
M
213
K
OTC_HUMAN
Disease (OTCD)
---
B
M
213
K
074
UniProt
VAR_010607
H
214
Y
OTC_HUMAN
Disease (OTCD)
---
B
H
214
Y
075
UniProt
VAR_004911
Q
216
E
OTC_HUMAN
Disease (OTCD)
---
B
Q
216
E
076
UniProt
VAR_004912
P
220
A
OTC_HUMAN
Disease (OTCD)
---
B
P
220
A
077
UniProt
VAR_004913
P
225
L
OTC_HUMAN
Disease (OTCD)
---
B
P
225
L
078
UniProt
VAR_004914
P
225
R
OTC_HUMAN
Disease (OTCD)
---
B
P
225
R
079
UniProt
VAR_004915
P
225
T
OTC_HUMAN
Disease (OTCD)
---
B
P
225
T
080
UniProt
VAR_004916
T
242
I
OTC_HUMAN
Disease (OTCD)
---
B
T
242
I
081
UniProt
VAR_004917
L
244
Q
OTC_HUMAN
Disease (OTCD)
---
B
L
244
Q
082
UniProt
VAR_004918
T
247
K
OTC_HUMAN
Disease (OTCD)
---
B
T
247
K
083
UniProt
VAR_004919
H
255
P
OTC_HUMAN
Disease (OTCD)
---
B
H
255
P
084
UniProt
VAR_010608
T
262
K
OTC_HUMAN
Disease (OTCD)
---
B
T
262
K
085
UniProt
VAR_004920
D
263
G
OTC_HUMAN
Disease (OTCD)
---
B
D
263
G
086
UniProt
VAR_004921
D
263
N
OTC_HUMAN
Disease (OTCD)
---
B
D
263
N
087
UniProt
VAR_004922
T
264
A
OTC_HUMAN
Disease (OTCD)
---
B
T
264
A
088
UniProt
VAR_004923
T
264
I
OTC_HUMAN
Disease (OTCD)
---
B
T
264
I
089
UniProt
VAR_010609
W
265
L
OTC_HUMAN
Disease (OTCD)
---
B
W
265
L
090
UniProt
VAR_004924
S
267
R
OTC_HUMAN
Disease (OTCD)
---
B
S
267
R
091
UniProt
VAR_004925
M
268
T
OTC_HUMAN
Disease (OTCD)
---
B
M
268
T
092
UniProt
VAR_004926
G
269
E
OTC_HUMAN
Disease (OTCD)
---
B
G
269
E
093
UniProt
VAR_004927
Q
270
R
OTC_HUMAN
Polymorphism
1800328
B
R
270
R
094
UniProt
VAR_004929
R
277
Q
OTC_HUMAN
Disease (OTCD)
---
B
R
277
Q
095
UniProt
VAR_004930
R
277
W
OTC_HUMAN
Disease (OTCD)
---
B
R
277
W
096
UniProt
VAR_012654
L
301
F
OTC_HUMAN
Disease (OTCD)
---
B
L
301
F
097
UniProt
VAR_004931
H
302
L
OTC_HUMAN
Disease (OTCD)
---
B
H
302
L
098
UniProt
VAR_004932
H
302
Q
OTC_HUMAN
Disease (OTCD)
---
B
H
302
Q
099
UniProt
VAR_004933
H
302
Y
OTC_HUMAN
Disease (OTCD)
---
B
H
302
Y
100
UniProt
VAR_004934
C
303
R
OTC_HUMAN
Disease (OTCD)
---
B
C
303
R
101
UniProt
VAR_004935
C
303
Y
OTC_HUMAN
Disease (OTCD)
---
B
C
303
Y
102
UniProt
VAR_004936
L
304
F
OTC_HUMAN
Disease (OTCD)
---
B
L
304
F
103
UniProt
VAR_012655
P
305
H
OTC_HUMAN
Disease (OTCD)
---
B
P
305
H
104
UniProt
VAR_004938
R
320
L
OTC_HUMAN
Disease (OTCD)
---
B
R
320
L
105
UniProt
VAR_010610
E
326
K
OTC_HUMAN
Disease (OTCD)
---
B
E
326
K
106
UniProt
VAR_004939
R
330
G
OTC_HUMAN
Disease (OTCD)
---
B
R
330
G
107
UniProt
VAR_012656
T
333
A
OTC_HUMAN
Polymorphism
---
B
T
333
A
108
UniProt
VAR_004940
A
336
S
OTC_HUMAN
Disease (OTCD)
---
B
A
336
S
109
UniProt
VAR_004941
V
337
L
OTC_HUMAN
Disease (OTCD)
---
B
V
337
L
110
UniProt
VAR_004942
V
339
L
OTC_HUMAN
Disease (OTCD)
---
B
V
339
L
111
UniProt
VAR_004943
S
340
P
OTC_HUMAN
Disease (OTCD)
---
B
S
340
P
112
UniProt
VAR_012657
L
341
P
OTC_HUMAN
Disease (OTCD)
---
B
L
341
P
113
UniProt
VAR_004944
T
343
K
OTC_HUMAN
Disease (OTCD)
---
B
T
343
K
114
UniProt
VAR_004946
Y
345
C
OTC_HUMAN
Disease (OTCD)
---
B
Y
345
C
115
UniProt
VAR_004947
Y
345
D
OTC_HUMAN
Disease (OTCD)
---
B
Y
345
D
116
UniProt
VAR_004948
F
354
C
OTC_HUMAN
Disease (OTCD)
---
B
F
354
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
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1: CARBAMOYLTRANSFERASE (B:86-93)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
OTC_HUMAN
86-93
3
-
B:86-93
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Exons
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SCOP Domains
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1a: SCOP_d1fvoa1 (A:34-184)
1b: SCOP_d1fvoa2 (A:185-354)
1c: SCOP_d1fvob1 (B:34-184)
1d: SCOP_d1fvob2 (B:185-354)
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Alpha and beta proteins (a/b)
(23833)
Fold
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ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
Aspartate/ornithine carbamoyltransferase
(87)
Protein domain
:
Ornithine transcarbamoylase
(13)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1fvoa1
A:34-184
1b
d1fvoa2
A:185-354
1c
d1fvob1
B:34-184
1d
d1fvob2
B:185-354
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CATH Domains
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1a: CATH_1fvoA01 (A:34-170,A:330-345)
1b: CATH_1fvoB01 (B:34-170,B:330-345)
1c: CATH_1fvoA02 (A:171-329)
1d: CATH_1fvoB02 (B:171-329)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Human (Homo sapiens)
(4)
1a
1fvoA01
A:34-170,A:330-345
1b
1fvoB01
B:34-170,B:330-345
1c
1fvoA02
A:171-329
1d
1fvoB02
B:171-329
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