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Asym. Unit
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Asym.Unit (102 KB)
Biol.Unit 1 (96 KB)
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(1)
Title
:
THE X-RAY STRUCTURE DETERMINATION OF BOVINE CARBONMONOXY HB AT 2.1 A RESOLUTION AND ITS RELATIONSHIP TO THE QUATERNARY STRUCTURE OF OTHER HB CRYSTAL FORMS
Authors
:
M. K. Safo, D. J. Abraham
Date
:
11 Sep 00 (Deposition) - 06 Jun 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Hemoglobin Tetramer, R-State, Quaternary Structure, Oxygen Storage/Transport Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. K. Safo, D. J. Abraham
The X-Ray Structure Determination Of Bovine Carbonmonoxy Hemoglobin At 2. 1 A Resoultion And Its Relationship To The Quaternary Structures Of Other Hemoglobin Crystal Froms.
Protein Sci. V. 10 1091 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: CARBON MONOXIDE (CMOa)
1b: CARBON MONOXIDE (CMOb)
1c: CARBON MONOXIDE (CMOc)
1d: CARBON MONOXIDE (CMOd)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CMO
4
Ligand/Ion
CARBON MONOXIDE
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:58 , VAL A:62 , HEM A:143
BINDING SITE FOR RESIDUE CMO A 142
2
AC2
SOFTWARE
TYR A:42 , HIS A:45 , HIS A:58 , LYS A:61 , LEU A:66 , HIS A:87 , LEU A:91 , VAL A:93 , ASN A:97 , PHE A:98 , LEU A:101 , VAL A:132 , LEU A:136 , CMO A:142 , HOH A:830 , HOH A:854
BINDING SITE FOR RESIDUE HEM A 143
3
AC3
SOFTWARE
HIS B:263 , VAL B:267 , HEM B:348
BINDING SITE FOR RESIDUE CMO B 347
4
AC4
SOFTWARE
THR B:238 , PHE B:241 , PHE B:242 , HIS B:263 , LYS B:266 , SER B:270 , LEU B:291 , HIS B:292 , LEU B:296 , VAL B:298 , ASN B:302 , PHE B:303 , CMO B:347 , HOH B:930 , LYS D:608
BINDING SITE FOR RESIDUE HEM B 348
5
AC5
SOFTWARE
HIS C:458 , VAL C:462 , HEM C:543
BINDING SITE FOR RESIDUE CMO C 542
6
AC6
SOFTWARE
TYR C:442 , PHE C:443 , HIS C:445 , HIS C:458 , LYS C:461 , GLU C:482 , HIS C:487 , LEU C:491 , VAL C:493 , ASN C:497 , PHE C:498 , LEU C:501 , LEU C:536 , CMO C:542 , HOH C:877
BINDING SITE FOR RESIDUE HEM C 543
7
AC7
SOFTWARE
HIS D:663 , VAL D:667 , HEM D:748
BINDING SITE FOR RESIDUE CMO D 747
8
AC8
SOFTWARE
ALA C:404 , PHE D:641 , PHE D:642 , HIS D:663 , LYS D:666 , VAL D:667 , SER D:670 , LEU D:688 , HIS D:692 , LEU D:696 , VAL D:698 , ASN D:702 , PHE D:703 , LEU D:706 , LEU D:741 , CMO D:747
BINDING SITE FOR RESIDUE HEM D 748
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SAPs(SNPs)/Variants
(8, 16)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_HBA_BOVIN_001 (H489Y, chain A/C, )
2: VAR_HBA_BOVIN_002 (N531S, chain A/C, )
3: VAR_HBB_BOVIN_001 (G616S, chain B/D, )
4: VAR_HBB_BOVIN_002 (K619H, chain B/D, )
5: VAR_HBB_BOVIN_003 (D621G, chain B/D, )
6: VAR_HBB_BOVIN_004 (S644T, chain B/D, )
7: VAR_HBB_BOVIN_005 (K720N, chain B/D, )
8: VAR_HBB_BOVIN_006 (K732Q, chain B/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_HBA_BOVIN_001
*
H
90
Y
HBA_BOVIN
---
---
A
C
H
89
489
Y
2
UniProt
VAR_HBA_BOVIN_002
*
N
132
S
HBA_BOVIN
---
---
A
C
N
131
531
S
3
UniProt
VAR_HBB_BOVIN_001
*
G
15
S
HBB_BOVIN
---
---
B
D
G
216
616
S
4
UniProt
VAR_HBB_BOVIN_002
*
K
18
H
HBB_BOVIN
---
---
B
D
K
219
619
H
5
UniProt
VAR_HBB_BOVIN_003
*
D
20
G
HBB_BOVIN
---
---
B
D
D
221
621
G
6
UniProt
VAR_HBB_BOVIN_004
*
S
43
T
HBB_BOVIN
---
---
B
D
S
244
644
T
7
UniProt
VAR_HBB_BOVIN_005
*
K
119
N
HBB_BOVIN
---
---
B
D
K
320
720
N
8
UniProt
VAR_HBB_BOVIN_006
*
K
131
Q
HBB_BOVIN
---
---
B
D
K
332
732
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: GLOBIN (B:203-346,D:603-746,A:2-141,C:402-...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GLOBIN
PS01033
Globin family profile.
HBB_BOVIN
2-145
2
B:203-346
D:603-746
HBA_BOVIN
3-142
2
A:2-141
C:402-541
[
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Exons
(6, 12)
Info
All Exons
Exon 1.1 (A:1-31 | C:401-431)
Exon 1.2 (A:31-99 | C:431-499)
Exon 1.3 (A:100-141 | C:500-541)
Exon 2.1 (B:202-230 | D:602-630)
Exon 2.2 (B:230-304 | D:630-704)
Exon 2.3 (B:305-346 | D:705-746)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
5: Boundary -/2.1
6: Boundary 2.1/2.2
7: Boundary 2.2/2.3
8: Boundary 2.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000037545
1
ENSBTAE00000380516
chr25:
669652-669785
134
HBA_BOVIN
1-32
32
2
A:1-31
C:401-431
31
31
1.2
ENSBTAT00000037545
2
ENSBTAE00000412716
chr25:
669887-670091
205
HBA_BOVIN
32-100
69
2
A:31-99
C:431-499
69
69
1.3
ENSBTAT00000037545
3
ENSBTAE00000409296
chr25:
670196-670419
224
HBA_BOVIN
101-142
42
2
A:100-141
C:500-541
42
42
2.1
ENSBTAT00000045694
1
ENSBTAE00000377266
chr15:
47825662-47825799
138
HBB_BOVIN
1-29
29
2
B:202-230
D:602-630
29
29
2.2
ENSBTAT00000045694
2
ENSBTAE00000383380
chr15:
47825928-47826150
223
HBB_BOVIN
29-103
75
2
B:230-304
D:630-704
75
75
2.3
ENSBTAT00000045694
3
ENSBTAE00000339283
chr15:
47827051-47827179
129
HBB_BOVIN
104-145
42
2
B:305-346
D:705-746
42
42
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1fsxa_ (A:)
1b: SCOP_d1fsxc_ (C:)
2a: SCOP_d1fsxb_ (B:)
2b: SCOP_d1fsxd_ (D:)
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(
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Hemoglobin, alpha-chain
(292)
Cow (Bos taurus) [TaxId: 9913]
(11)
1a
d1fsxa_
A:
1b
d1fsxc_
C:
Protein domain
:
Hemoglobin, beta-chain
(292)
Cow (Bos taurus) [TaxId: 9913]
(11)
2a
d1fsxb_
B:
2b
d1fsxd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1fsxB00 (B:202-346)
1b: CATH_1fsxA00 (A:1-141)
1c: CATH_1fsxC00 (C:401-541)
1d: CATH_1fsxD00 (D:602-746)
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(
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(
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(
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(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Globin-like
(786)
Homologous Superfamily
:
Globins
(743)
Cattle (Bos taurus)
(6)
1a
1fsxB00
B:202-346
1b
1fsxA00
A:1-141
1c
1fsxC00
C:401-541
1d
1fsxD00
D:602-746
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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)
Protein
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Sidechain
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Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
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