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1FSU
Asym. Unit
Info
Asym.Unit (90 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 4-SULFATASE (HUMAN)
Authors
:
C. Bond, M. Guss
Date
:
29 Jul 96 (Deposition) - 04 Feb 98 (Release) - 02 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Sulfatase, Glycosaminoglycan Degradation, Hydrolase, Glycoprotein, Lysosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. S. Bond, P. R. Clements, S. J. Ashby, C. A. Collyer, S. J. Harrop, J. J. Hopwood, J. M. Guss
Structure Of A Human Lysosomal Sulfatase.
Structure V. 5 277 1997
[
close entry info
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: (3S)-3-(SULFOOXY)-L-SERINE (ALSa)
2a: CALCIUM ION (CAa)
3a: CHLORIDE ION (CLa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALS
1
Mod. Amino Acid
(3S)-3-(SULFOOXY)-L-SERINE
2
CA
1
Ligand/Ion
CALCIUM ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: MEB (UNKNOWN)
8: SAL (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:213 , GLU A:275 , ALA A:276 , ASN A:279 , NAG A:601
BINDING SITE FOR RESIDUE NAG A 600
2
AC2
SOFTWARE
NAG A:600
BINDING SITE FOR RESIDUE NAG A 601
3
AC3
SOFTWARE
PRO A:397 , ASN A:426 , VAL A:429 , NAG A:603
BINDING SITE FOR RESIDUE NAG A 602
4
AC4
SOFTWARE
NAG A:602
BINDING SITE FOR RESIDUE NAG A 603
5
AC5
SOFTWARE
ASP A:53 , ASP A:54 , ALS A:91 , ASP A:300 , ASN A:301
BINDING SITE FOR RESIDUE CA A 604
6
AC6
SOFTWARE
PRO A:89 , ASN A:394 , HIS A:430
BINDING SITE FOR RESIDUE CL A 605
7
MEB
UNKNOWN
ASP A:53 , ASP A:54 , ALS A:91 , ASP A:300 , ASN A:301
THIS IS THE METAL BINDING SITE. THE METAL WAS IDENTIFIED AS CALCIUM BY ITS PEAK HEIGHT IN DIFFERENCE ELECTRON DENSITY MAPS, BY SUCCESSIVE TEMPERATURE FACTOR REFINEMENT AND BY THE NATURE AND GEOMETRY OF THE COORDINATING LIGANDS.
8
SAL
UNKNOWN
ALS A:91 , HIS A:242 , LYS A:318 , LYS A:145 , ARG A:95 , HIS A:147
THESE RESIDUES AND THE METAL ION STABILIZE THE SULFATE ESTER RESIDUE 91. TOGETHER WITH THE METAL BINDING SITE THIS FORMS THE CENTER OF THE CATALYTIC ACTIVE SITE.
[
close Site info
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SAPs(SNPs)/Variants
(32, 32)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_019017 (S65F, chain A, )
02: VAR_007294 (T92M, chain A, )
03: VAR_007295 (R95Q, chain A, )
04: VAR_019019 (P116H, chain A, )
05: VAR_007296 (C117R, chain A, )
06: VAR_007297 (G137V, chain A, )
07: VAR_019020 (M142I, chain A, )
08: VAR_019021 (G144R, chain A, )
09: VAR_019022 (W146L, chain A, )
10: VAR_019023 (W146R, chain A, )
11: VAR_019024 (W146S, chain A, )
12: VAR_007298 (R152W, chain A, )
13: VAR_007299 (R160Q, chain A, )
14: VAR_019025 (C192R, chain A, )
15: VAR_007300 (Y210C, chain A, )
16: VAR_007301 (L236P, chain A, )
17: VAR_019026 (Q239R, chain A, )
18: VAR_007302 (G302R, chain A, )
19: VAR_019027 (W312C, chain A, )
20: VAR_019028 (R315Q, chain A, )
21: VAR_019029 (L321P, chain A, )
22: VAR_061883 (V358L, chain A, )
23: VAR_016061 (V358M, chain A, )
24: VAR_007303 (V376M, chain A, )
25: VAR_019030 (S384N, chain A, )
26: VAR_007304 (H393P, chain A, )
27: VAR_019031 (F399L, chain A, )
28: VAR_007305 (C405Y, chain A, )
29: VAR_019032 (R484G, chain A, )
30: VAR_007306 (L498P, chain A, )
31: VAR_019033 (C521Y, chain A, )
32: VAR_019034 (P531R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_019017
S
65
F
ARSB_HUMAN
Disease (MPS6)
---
A
S
65
F
02
UniProt
VAR_007294
T
92
M
ARSB_HUMAN
Disease (MPS6)
---
A
T
92
M
03
UniProt
VAR_007295
R
95
Q
ARSB_HUMAN
Disease (MPS6)
---
A
R
95
Q
04
UniProt
VAR_019019
P
116
H
ARSB_HUMAN
Disease (MPS6)
---
A
P
116
H
05
UniProt
VAR_007296
C
117
R
ARSB_HUMAN
Disease (MPS6)
---
A
C
117
R
06
UniProt
VAR_007297
G
137
V
ARSB_HUMAN
Disease (MPS6)
---
A
G
137
V
07
UniProt
VAR_019020
M
142
I
ARSB_HUMAN
Disease (MPS6)
---
A
M
142
I
08
UniProt
VAR_019021
G
144
R
ARSB_HUMAN
Disease (MPS6)
---
A
G
144
R
09
UniProt
VAR_019022
W
146
L
ARSB_HUMAN
Disease (MPS6)
---
A
W
146
L
10
UniProt
VAR_019023
W
146
R
ARSB_HUMAN
Disease (MPS6)
---
A
W
146
R
11
UniProt
VAR_019024
W
146
S
ARSB_HUMAN
Disease (MPS6)
---
A
W
146
S
12
UniProt
VAR_007298
R
152
W
ARSB_HUMAN
Disease (MPS6)
---
A
R
152
W
13
UniProt
VAR_007299
R
160
Q
ARSB_HUMAN
Disease (MPS6)
---
A
R
160
Q
14
UniProt
VAR_019025
C
192
R
ARSB_HUMAN
Disease (MPS6)
---
A
C
192
R
15
UniProt
VAR_007300
Y
210
C
ARSB_HUMAN
Disease (MPS6)
---
A
Y
210
C
16
UniProt
VAR_007301
L
236
P
ARSB_HUMAN
Disease (MPS6)
---
A
L
236
P
17
UniProt
VAR_019026
Q
239
R
ARSB_HUMAN
Disease (MPS6)
---
A
Q
239
R
18
UniProt
VAR_007302
G
302
R
ARSB_HUMAN
Disease (MPS6)
---
A
G
302
R
19
UniProt
VAR_019027
W
312
C
ARSB_HUMAN
Disease (MPS6)
---
A
W
312
C
20
UniProt
VAR_019028
R
315
Q
ARSB_HUMAN
Disease (MPS6)
---
A
R
315
Q
21
UniProt
VAR_019029
L
321
P
ARSB_HUMAN
Disease (MPS6)
---
A
L
321
P
22
UniProt
VAR_061883
V
358
L
ARSB_HUMAN
Polymorphism
1065757
A
V
358
L
23
UniProt
VAR_016061
V
358
M
ARSB_HUMAN
Polymorphism
1065757
A
V
358
M
24
UniProt
VAR_007303
V
376
M
ARSB_HUMAN
Polymorphism
17220759
A
V
376
M
25
UniProt
VAR_019030
S
384
N
ARSB_HUMAN
Disease (MPS6)
25414
A
S
384
N
26
UniProt
VAR_007304
H
393
P
ARSB_HUMAN
Disease (MPS6)
---
A
H
393
P
27
UniProt
VAR_019031
F
399
L
ARSB_HUMAN
Disease (MPS6)
---
A
F
399
L
28
UniProt
VAR_007305
C
405
Y
ARSB_HUMAN
Disease (MPS6)
---
A
C
405
Y
29
UniProt
VAR_019032
R
484
G
ARSB_HUMAN
Disease (MPS6)
201101343
A
R
484
G
30
UniProt
VAR_007306
L
498
P
ARSB_HUMAN
Disease (MPS6)
---
A
L
498
P
31
UniProt
VAR_019033
C
521
Y
ARSB_HUMAN
Disease (MPS6)
---
A
C
521
Y
32
UniProt
VAR_019034
P
531
R
ARSB_HUMAN
Disease (MPS6)
---
A
P
531
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: SULFATASE_1 (A:89-101)
2: SULFATASE_2 (A:137-147)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SULFATASE_1
PS00523
Sulfatases signature 1.
ARSB_HUMAN
89-101
1
A:89-101
2
SULFATASE_2
PS00149
Sulfatases signature 2.
ARSB_HUMAN
137-147
1
A:137-147
[
close PROSITE info
]
Exons
(8, 8)
Info
All Exons
Exon 1.2b (A:42-104)
Exon 1.3 (A:105-167)
Exon 1.4 (A:167-230)
Exon 1.5 (A:231-300)
Exon 1.6b (A:300-381)
Exon 1.8 (A:381-405)
Exon 1.11 (A:405-446 (gaps))
Exon 1.12c (A:446-533)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.2b
2: Boundary 1.2b/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6b
6: Boundary 1.6b/1.8
7: Boundary 1.8/1.11
8: Boundary 1.11/1.12c
9: Boundary 1.12c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000264914
2b
ENSE00001366770
chr5:
78281608-78280760
849
ARSB_HUMAN
1-104
104
1
A:42-104
63
1.3
ENST00000264914
3
ENSE00001005074
chr5:
78265015-78264829
187
ARSB_HUMAN
105-167
63
1
A:105-167
63
1.4
ENST00000264914
4
ENSE00001005073
chr5:
78260429-78260239
191
ARSB_HUMAN
167-230
64
1
A:167-230
64
1.5
ENST00000264914
5
ENSE00001005072
chr5:
78251325-78251118
208
ARSB_HUMAN
231-300
70
1
A:231-300
70
1.6b
ENST00000264914
6b
ENSE00001083459
chr5:
78181650-78181407
244
ARSB_HUMAN
300-381
82
1
A:300-381
82
1.8
ENST00000264914
8
ENSE00001083461
chr5:
78135249-78135179
71
ARSB_HUMAN
381-405
25
1
A:381-405
25
1.11
ENST00000264914
11
ENSE00001162061
chr5:
78077797-78077675
123
ARSB_HUMAN
405-446
42
1
A:405-446 (gaps)
42
1.12c
ENST00000264914
12c
ENSE00001216478
chr5:
78076485-78073032
3454
ARSB_HUMAN
446-533
88
1
A:446-533
88
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1fsua_ (A:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Alkaline phosphatase-like
(78)
Superfamily
:
Alkaline phosphatase-like
(78)
Family
:
Arylsulfatase
(10)
Protein domain
:
Arylsulfatase B (4-sulfatase)
(2)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1fsua_
A:
[
close SCOP info
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1fsuA02 (A:389-509)
2a: CATH_1fsuA01 (A:42-388,A:510-533)
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(
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Arylsulfatase, C-terminal domain
(26)
Homologous Superfamily
:
[code=3.30.1120.10, no name defined]
(11)
Human (Homo sapiens)
(9)
1a
1fsuA02
A:389-509
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Alkaline Phosphatase, subunit A
(66)
Homologous Superfamily
:
Alkaline Phosphatase, subunit A
(66)
Human (Homo sapiens)
(14)
2a
1fsuA01
A:42-388,A:510-533
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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