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1FSK
Asym. Unit
Info
Asym.Unit (381 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (99 KB)
Biol.Unit 3 (99 KB)
Biol.Unit 4 (99 KB)
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(1)
Title
:
COMPLEX FORMATION BETWEEN A FAB FRAGMENT OF A MONOCLONAL IGG ANTIBODY AND THE MAJOR ALLERGEN FROM BIRCH POLLEN BET V 1
Authors
:
O. Mirza, A. Henriksen, H. Ipsen, J. Larsen, M. Wissenbach, M. Spangfort, M. Gajhede
Date
:
11 Sep 00 (Deposition) - 02 Oct 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Keywords
:
Bet V 1, Bv16 Fab Fragment, Antibody Allergen Complex, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
O. Mirza, A. Henriksen, H. Ipsen, J. N. Larsen, M. Wissenbach, M. D. Spangfort, M. Gajhede
Dominant Epitopes And Allergic Cross-Reactivity: Complex Formation Between A Fab Fragment Of A Monoclonal Murine Igg Antibody And The Major Allergen From Birch Pollen Bet V 1.
J. Immunol. V. 165 331 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_BEV1A_BETPN_001 (L62L, chain A/D/G/J, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_BEV1A_BETPN_001
*
F
63
L
BEV1A_BETPN
---
---
A/D/G/J
L
62
L
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:192-198,E:192-198,H:192-198,K:19...)
2: PATHOGENESIS_BETVI (A:88-120,D:88-120,G:88-120,J:88-12...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGKC_MOUSE
84-90
4
B:192-198
E:192-198
H:192-198
K:192-198
2
PATHOGENESIS_BETVI
PS00451
Pathogenesis-related proteins Bet v I family signature.
BEV1A_BETPN
89-121
4
A:88-120
D:88-120
G:88-120
J:88-120
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 20)
Info
All SCOP Domains
1a: SCOP_d1fskc2 (C:119-220)
1b: SCOP_d1fskf2 (F:119-220)
1c: SCOP_d1fski2 (I:119-220)
1d: SCOP_d1fskl2 (L:119-220)
2a: SCOP_d1fskb2 (B:108-214)
2b: SCOP_d1fske2 (E:108-214)
2c: SCOP_d1fskh2 (H:108-214)
2d: SCOP_d1fskk2 (K:108-214)
3a: SCOP_d1fskc1 (C:1-118)
3b: SCOP_d1fskf1 (F:1-118)
3c: SCOP_d1fski1 (I:1-118)
3d: SCOP_d1fskl1 (L:1-118)
4a: SCOP_d1fskb1 (B:1-107)
4b: SCOP_d1fske1 (E:1-107)
4c: SCOP_d1fskh1 (H:1-107)
4d: SCOP_d1fskk1 (K:1-107)
5a: SCOP_d1fska_ (A:)
5b: SCOP_d1fskd_ (D:)
5c: SCOP_d1fskg_ (G:)
5d: SCOP_d1fskj_ (J:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1fskc2
C:119-220
1b
d1fskf2
F:119-220
1c
d1fski2
I:119-220
1d
d1fskl2
L:119-220
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1fskb2
B:108-214
2b
d1fske2
E:108-214
2c
d1fskh2
H:108-214
2d
d1fskk2
K:108-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
3a
d1fskc1
C:1-118
3b
d1fskf1
F:1-118
3c
d1fski1
I:1-118
3d
d1fskl1
L:1-118
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
4a
d1fskb1
B:1-107
4b
d1fske1
E:1-107
4c
d1fskh1
H:1-107
4d
d1fskk1
K:1-107
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
Pathogenesis-related protein 10 (PR10)-like
(38)
Protein domain
:
Major tree pollen allergen
(22)
European white birch (Betula pendula), Bet v I-a [TaxId: 3505]
(1)
5a
d1fska_
A:
5b
d1fskd_
D:
5c
d1fskg_
G:
5d
d1fskj_
J:
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CATH Domains
(2, 20)
Info
all CATH domains
1a: CATH_1fskA00 (A:1-159)
1b: CATH_1fskD00 (D:1-159)
1c: CATH_1fskG00 (G:1-159)
1d: CATH_1fskJ00 (J:1-159)
2a: CATH_1fskE02 (E:109-211)
2b: CATH_1fskK02 (K:109-211)
2c: CATH_1fskI02 (I:119-217)
2d: CATH_1fskL02 (L:119-217)
2e: CATH_1fskC01 (C:1-118)
2f: CATH_1fskF01 (F:1-118)
2g: CATH_1fskI01 (I:1-118)
2h: CATH_1fskL01 (L:1-118)
2i: CATH_1fskB02 (B:108-211)
2j: CATH_1fskH02 (H:108-211)
2k: CATH_1fskH01 (H:3-107)
2l: CATH_1fskB01 (B:1-107)
2m: CATH_1fskE01 (E:1-108)
2n: CATH_1fskK01 (K:1-108)
2o: CATH_1fskC02 (C:119-217)
2p: CATH_1fskF02 (F:119-217)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4
(47)
Homologous Superfamily
:
[code=3.30.530.20, no name defined]
(47)
European white birch (Betula pendula)
(6)
1a
1fskA00
A:1-159
1b
1fskD00
D:1-159
1c
1fskG00
G:1-159
1d
1fskJ00
J:1-159
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
European white birch (Betula pendula)
(1)
2a
1fskE02
E:109-211
2b
1fskK02
K:109-211
2c
1fskI02
I:119-217
2d
1fskL02
L:119-217
2e
1fskC01
C:1-118
2f
1fskF01
F:1-118
2g
1fskI01
I:1-118
2h
1fskL01
L:1-118
2i
1fskB02
B:108-211
2j
1fskH02
H:108-211
2k
1fskH01
H:3-107
2l
1fskB01
B:1-107
2m
1fskE01
E:1-108
2n
1fskK01
K:1-108
2o
1fskC02
C:119-217
2p
1fskF02
F:119-217
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Pfam Domains
(0, 0)
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Show PDB file:
Asym.Unit (381 KB)
Header - Asym.Unit
Biol.Unit 1 (99 KB)
Header - Biol.Unit 1
Biol.Unit 2 (99 KB)
Header - Biol.Unit 2
Biol.Unit 3 (99 KB)
Header - Biol.Unit 3
Biol.Unit 4 (99 KB)
Header - Biol.Unit 4
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