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1FS1
Asym. Unit
Info
Asym.Unit (67 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
INSIGHTS INTO SCF UBIQUITIN LIGASES FROM THE STRUCTURE OF THE SKP1-SKP2 COMPLEX
Authors
:
B. A. Schulman, A. C. Carrano, P. D. Jeffrey, Z. Bowen, E. R. E. Kinnucan, M. S. Finnin, S. J. Elledge, J. W. Harper, M. Pagano, N. P. Pavletich
Date
:
08 Sep 00 (Deposition) - 29 Nov 00 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Skp1, Skp2, F-Box, Lrr, Leucine-Rich Repeat, Scf, Ubiquitin, E3, Ubiquitin Protein Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. A. Schulman, A. C. Carrano, P. D. Jeffrey, Z. Bowen, E. R. Kinnucan, M. S. Finnin, S. J. Elledge, J. W. Harper, M. Pagano, N. P. Pavletich
Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex.
Nature V. 408 381 2000
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051999 (F14L, chain B/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051999
F
14
L
SKP1_HUMAN
Polymorphism
11538034
B/D
F
14
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(6, 12)
Info
All Exons
Exon 1.3 (A:109-143 | C:109-143)
Exon 1.4 (A:143-149 | C:143-149)
Exon 2.5b (B:2-33 | D:2-33)
Exon 2.7 (B:33-57 (gaps) | D:33-57 (gaps))
Exon 2.8d (B:58-105 (gaps) | D:58-105 (gaps))
Exon 2.9d (B:106-140 | D:106-140)
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All Exon Boundaries
1: Boundary 1.2a/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 2.2a/2.5b
5: Boundary 2.5b/2.7
6: Boundary 2.7/2.8d
7: Boundary 2.8d/2.9d
8: Boundary 2.9d/2.9l
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000274255
1b
ENSE00001852758
chr5:
36152169-36152372
204
SKP2_HUMAN
1-3
3
0
-
-
1.2a
ENST00000274255
2a
ENSE00001130153
chr5:
36152873-36153144
272
SKP2_HUMAN
3-94
92
0
-
-
1.3
ENST00000274255
3
ENSE00001006180
chr5:
36163747-36163858
112
SKP2_HUMAN
94-131
38
2
A:109-143
C:109-143
35
35
1.4
ENST00000274255
4
ENSE00001006177
chr5:
36166621-36166764
144
SKP2_HUMAN
131-179
49
2
A:143-149
C:143-149
7
7
1.5
ENST00000274255
5
ENSE00001006179
chr5:
36168415-36168549
135
SKP2_HUMAN
179-224
46
0
-
-
1.6b
ENST00000274255
6b
ENSE00001006176
chr5:
36170446-36170544
99
SKP2_HUMAN
224-257
34
0
-
-
1.7
ENST00000274255
7
ENSE00002147593
chr5:
36171705-36171835
131
SKP2_HUMAN
257-301
45
0
-
-
1.8
ENST00000274255
8
ENSE00000971194
chr5:
36177067-36177118
52
SKP2_HUMAN
301-318
18
0
-
-
1.9
ENST00000274255
9
ENSE00000971195
chr5:
36177287-36177394
108
SKP2_HUMAN
318-354
37
0
-
-
1.12c
ENST00000274255
12c
ENSE00001082238
chr5:
36181920-36184421
2502
SKP2_HUMAN
354-424
71
0
-
-
2.2a
ENST00000353411
2a
ENSE00001169035
chr5:
133512729-133512546
184
SKP1_HUMAN
-
0
0
-
-
2.5b
ENST00000353411
5b
ENSE00000763313
chr5:
133509713-133509617
97
SKP1_HUMAN
1-33
33
2
B:2-33
D:2-33
32
32
2.7
ENST00000353411
7
ENSE00002156080
chr5:
133502934-133502861
74
SKP1_HUMAN
33-57
25
2
B:33-57 (gaps)
D:33-57 (gaps)
25
25
2.8d
ENST00000353411
8d
ENSE00000763311
chr5:
133496821-133496678
144
SKP1_HUMAN
58-105
48
2
B:58-105 (gaps)
D:58-105 (gaps)
48
48
2.9d
ENST00000353411
9d
ENSE00001328116
chr5:
133494286-133494146
141
SKP1_HUMAN
106-152
47
2
B:106-140
D:106-140
35
35
2.9l
ENST00000353411
9l
ENSE00001291683
chr5:
133493459-133492082
1378
SKP1_HUMAN
153-163
11
0
-
-
[
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SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1fs1a1 (A:109-149)
1b: SCOP_d1fs1c1 (C:109-149)
2a: SCOP_d1fs1b1 (B:86-140)
2b: SCOP_d1fs1d1 (D:84-140)
3a: SCOP_d1fs1b2 (B:2-68)
3b: SCOP_d1fs1d2 (D:2-68)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
F-box domain
(12)
Superfamily
:
F-box domain
(12)
Family
:
F-box domain
(12)
Protein domain
:
Skp2
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1fs1a1
A:109-149
1b
d1fs1c1
C:109-149
Fold
:
Skp1 dimerisation domain-like
(18)
Superfamily
:
Skp1 dimerisation domain-like
(18)
Family
:
Skp1 dimerisation domain-like
(13)
Protein domain
:
Cyclin A/CDK2-associated p45, Skp1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
2a
d1fs1b1
B:86-140
2b
d1fs1d1
D:84-140
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
POZ domain
(79)
Superfamily
:
POZ domain
(79)
Family
:
BTB/POZ domain
(43)
Protein domain
:
Cyclin A/CDK2-associated p45, Skp1
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
3a
d1fs1b2
B:2-68
3b
d1fs1d2
D:2-68
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1fs1B00 (B:2-140)
1b: CATH_1fs1D00 (D:2-140)
2a: CATH_1fs1A00 (A:109-149)
2b: CATH_1fs1C00 (C:109-149)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Potassium Channel Kv1.1; Chain A
(53)
Homologous Superfamily
:
Potassium Channel Kv1.1; Chain A
(53)
Human (Homo sapiens)
(30)
1a
1fs1B00
B:2-140
1b
1fs1D00
D:2-140
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Monooxygenase
(39)
Homologous Superfamily
:
[code=1.20.1280.50, no name defined]
(4)
Human (Homo sapiens)
(3)
2a
1fs1A00
A:109-149
2b
1fs1C00
C:109-149
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Pfam Domains
(0, 0)
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all PFAM domains
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