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1FRT
Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (98 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF RAT NEONATAL FC RECEPTOR WITH FC
Authors
:
W. P. Burmeister, P. J. Bjorkman
Date
:
11 Nov 94 (Deposition) - 14 Feb 95 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
4.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Complex (Receptor-Immunoglobulin), Complex (Receptor-Immunoglobulin) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. P. Burmeister, A. H. Huber, P. J. Bjorkman
Crystal Structure Of The Complex Of Rat Neonatal Fc Recepto With Fc.
Nature V. 372 379 1994
(for further references see the
PDB file header
)
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Hetero Components
(5, 12)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: ALPHA-L-FUCOSE (FUCa)
2b: ALPHA-L-FUCOSE (FUCb)
3a: BETA-D-GALACTOSE (GALa)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
FUC
2
Ligand/Ion
ALPHA-L-FUCOSE
3
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
4
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: B1A (AUTHOR)
11: B1B (AUTHOR)
12: B2A (AUTHOR)
13: B2B (AUTHOR)
14: BC1 (SOFTWARE)
15: BC2 (SOFTWARE)
16: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:102 , ASN A:104
BINDING SITE FOR RESIDUE NAG A 401
02
AC2
SOFTWARE
ASN A:192 , SER A:193 , ASN A:225 , GLU A:243 , FUC A:405
BINDING SITE FOR RESIDUE NAG A 403
03
AC3
SOFTWARE
SER A:193 , GLY A:194 , NAG A:403
BINDING SITE FOR RESIDUE FUC A 405
04
AC4
SOFTWARE
FUC C:2 , NAG C:3 , VAL C:264 , TYR C:296 , ASN C:297
BINDING SITE FOR RESIDUE NAG C 1
05
AC5
SOFTWARE
NAG C:1 , ASN C:297
BINDING SITE FOR RESIDUE FUC C 2
06
AC6
SOFTWARE
NAG C:1 , BMA C:4 , MAN C:5 , ARG C:301
BINDING SITE FOR RESIDUE NAG C 3
07
AC7
SOFTWARE
NAG C:3 , MAN C:5 , MAN C:8 , NAG C:9 , PHE C:241 , PHE C:243
BINDING SITE FOR RESIDUE BMA C 4
08
AC8
SOFTWARE
NAG C:3 , BMA C:4 , NAG C:6 , ARG C:301
BINDING SITE FOR RESIDUE MAN C 5
09
AC9
SOFTWARE
MAN C:5 , GAL C:7 , THR C:260
BINDING SITE FOR RESIDUE NAG C 6
10
B1A
AUTHOR
ASN A:84 , GLN A:85 , ILE A:86 , PHE A:90 , ALA A:113 , LEU A:114 , ASN A:115 , GLY A:116 , GLU A:117 , GLU A:118 , PHE A:119 , GLY A:131 , GLU A:132 , TRP A:133 , PRO A:134 , GLU A:135 , THR A:136 , ASP A:137 , ILE B:1 , GLN B:2 , LYS B:3 , THR B:4 , THR B:86 , LYS B:88
BINDING SITE FOR FC ON FCRN
11
B1B
AUTHOR
LYS C:248 , THR C:250 , LEU C:251 , MET C:252 , ILE C:253 , SER C:254 , ARG C:255 , THR C:256 , PRO C:257 , LYS C:288 , LYS C:290 , PRO C:291 , VAL C:308 , LEU C:309 , HIS C:310 , GLN C:311 , LEU C:314 , GLY C:385 , GLN C:386 , PRO C:387 , MET C:428 , HIS C:433 , ASN C:434 , HIS C:435 , TYR C:436
BINDING SITE FOR FCRN ON FC
12
B2A
AUTHOR
LEU A:219 , LYS A:245
POSSIBLE BINDING SITE FOR FC ON THE SECOND MOLECULE OF THE FCRN DIMER
13
B2B
AUTHOR
GLN C:272 , HIS C:285
POSSIBLE BINDING SITE FOR FCRN ASSUMING THE PRESENCE OF THE FCRN DIMER
14
BC1
SOFTWARE
NAG C:6 , PRO C:245 , LYS C:246 , ASP C:249 , GLU C:258
BINDING SITE FOR RESIDUE GAL C 7
15
BC2
SOFTWARE
BMA C:4 , NAG C:9 , PHE C:241
BINDING SITE FOR RESIDUE MAN C 8
16
BC3
SOFTWARE
BMA C:4 , MAN C:8
BINDING SITE FOR RESIDUE NAG C 9
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,A:252-258)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_RAT
98-104
1
B:78-84
FCGRN_RAT
274-280
1
A:252-258
[
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]
Exons
(7, 7)
Info
All Exons
Exon 1.1 (B:1-3)
Exon 1.2 (B:3-96)
Exon 1.3 (B:96-99)
Exon 2.1 (A:1-2)
Exon 2.2 (A:2-90)
Exon 2.3 (A:91-182)
Exon 2.4 (A:182-269)
View:
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Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary -/2.1
6: Boundary 2.1/2.2
7: Boundary 2.2/2.3
8: Boundary 2.3/2.4
9: Boundary 2.4/2.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000023017
1
ENSRNOE00000164042
chr3:
108927919-108927992
74
B2MG_RAT
1-23
23
1
B:1-3
3
1.2
ENSRNOT00000023017
2
ENSRNOE00000164162
chr3:
108930763-108931041
279
B2MG_RAT
23-116
94
1
B:3-96
94
1.3
ENSRNOT00000023017
3
ENSRNOE00000164268
chr3:
108931555-108931583
29
B2MG_RAT
116-119
4
1
B:96-99
4
1.4
ENSRNOT00000023017
4
ENSRNOE00000164313
chr3:
108932497-108932718
222
B2MG_RAT
-
0
0
-
-
2.1
ENSRNOT00000027944
1
ENSRNOE00000200618
chr1:
95575645-95575374
272
FCGRN_RAT
1-24
24
1
A:1-2
2
2.2
ENSRNOT00000027944
2
ENSRNOE00000332713
chr1:
95575029-95574764
266
FCGRN_RAT
24-112
89
1
A:2-90
89
2.3
ENSRNOT00000027944
3
ENSRNOE00000317180
chr1:
95574558-95574285
274
FCGRN_RAT
113-204
92
1
A:91-182
92
2.4
ENSRNOT00000027944
4
ENSRNOE00000200632
chr1:
95568691-95568422
270
FCGRN_RAT
204-294
91
1
A:182-269
88
2.5
ENSRNOT00000027944
5
ENSRNOE00000200697
chr1:
95567379-95567263
117
FCGRN_RAT
294-333
40
0
-
-
2.6
ENSRNOT00000027944
6
ENSRNOE00000200642
chr1:
95567073-95566717
357
FCGRN_RAT
333-368
36
0
-
-
[
close EXON info
]
SCOP Domains
(5, 5)
Info
All SCOP Domains
1a: SCOP_d1frtb_ (B:)
2a: SCOP_d1frta1 (A:179-269)
3a: SCOP_d1frtc1 (C:239-341)
4a: SCOP_d1frtc2 (C:342-443)
5a: SCOP_d1frta2 (A:1-178)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
1a
d1frtb_
B:
Protein domain
:
Fc (IgG) receptor, alpha-3 domain
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
2a
d1frta1
A:179-269
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
(36)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
3a
d1frtc1
C:239-341
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
(38)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
4a
d1frtc2
C:342-443
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Fc (IgG) receptor, alpha-1 and alpha-2 domains
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
5a
d1frta2
A:1-178
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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