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1FQ5
Asym. Unit
Info
Asym.Unit (65 KB)
Biol.Unit 1 (59 KB)
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(1)
Title
:
X-RAY STRUCTURE OF A CYCLIC STATINE INHIBITOR PD-129,541 BOUND TO YEAST PROTEINASE A
Authors
:
N. B. Cronin, M. O. Badasso, I. J. Tickle, T. Dreyer, D. J. Hoover, R. L. Ro C. C. Humblet, E. A. Lunney, J. B. Cooper
Date
:
03 Sep 00 (Deposition) - 20 Sep 00 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. B. Cronin, M. O. Badasso, I. J Tickle, T. Dreyer, D. J. Hoover, R. L. Rosati, C. C. Humblet, E. A. Lunney, J. B. Cooper
X-Ray Structures Of Five Renin Inhibitors Bound To Saccharopepsin: Exploration Of Active-Site Specificity.
J. Mol. Biol. V. 303 745 2000
(for further references see the
PDB file header
)
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Hetero Components
(5, 7)
Info
All Hetero Components
1a: N-[(5S,9S,10S,13S)-9-HYDROXY-5,10-... (0GMa)
2a: BETA-D-MANNOSE (BMAa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
0GM
1
Ligand/Ion
N-[(5S,9S,10S,13S)-9-HYDROXY-5,10-BIS(2-METHYLPROPYL)-4,7,12,16-TETRAOXO-3,6,11,17-TETRAAZABICYCLO[17.3.1]TRICOSA-1(23),19,21-TRIEN-13-YL]-3-(NAPHTHALEN-1-YL)-2-(NAPHTHALEN-1-YLMETHYL)PROPANAMIDE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:67 , ASP A:100 , VAL A:133 , NAG A:333 , HOH A:524 , HOH A:547
BINDING SITE FOR RESIDUE NAG A 332
2
AC2
SOFTWARE
ASP A:131 , LYS A:132 , NAG A:332 , MAN A:334
BINDING SITE FOR RESIDUE NAG A 333
3
AC3
SOFTWARE
NAG A:333 , MAN A:335 , BMA A:336
BINDING SITE FOR RESIDUE MAN A 334
4
AC4
SOFTWARE
ASP A:126 , TYR A:138 , GLN A:142 , MAN A:334 , BMA A:336
BINDING SITE FOR RESIDUE MAN A 335
5
AC5
SOFTWARE
MAN A:334 , MAN A:335 , HOH A:657
BINDING SITE FOR RESIDUE BMA A 336
6
AC6
SOFTWARE
ILE A:259 , GLY A:264 , ASN A:266
BINDING SITE FOR RESIDUE NDG A 337
7
AC7
SOFTWARE
ALA A:12 , GLN A:13 , ASP A:32 , GLY A:34 , ILE A:73 , GLN A:74 , TYR A:75 , GLY A:76 , THR A:77 , THR A:111 , GLY A:115 , ILE A:128 , TYR A:189 , ASP A:215 , GLY A:217 , THR A:218 , SER A:219 , PHE A:291 , ILE A:300
BINDING SITE FOR RESIDUE 0GM A 338
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (A:14-323)
2: ASP_PROTEASE (A:29-40|A:212-223)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
CARP_YEAST
91-402
1
A:14-323
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
CARP_YEAST
106-117
291-302
2
A:29-40
A:212-223
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Exons
(1, 1)
Info
All Exons
Exon 1.1 (A:0-326 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YPL154C
1
YPL154C.1
XVI:260930-259713
1218
CARP_YEAST
1-405
405
1
A:0-326 (gaps)
330
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1fq5a_ (A:)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
Pepsin-like
(505)
Protein domain
:
Acid protease
(44)
Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]
(11)
1a
d1fq5a_
A:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1fq5A02 (A:171-325)
1b: CATH_1fq5A01 (A:0-170)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Baker's yeast (Saccharomyces cerevisiae)
(11)
1a
1fq5A02
A:171-325
1b
1fq5A01
A:0-170
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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